Wall clock time and date at job start Mon Mar 30 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99514 * 2 1 4 4 H 1.48493 * 109.46978 * 239.99739 * 3 2 1 5 5 H 1.48499 * 109.47535 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46970 * 119.99718 * 3 2 1 7 7 C 1.37874 * 120.00439 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47031 * 180.02562 * 10 9 7 12 12 S 1.75853 * 125.23340 * 270.14549 * 11 10 9 13 13 C 1.75809 * 91.16068 * 180.20686 * 12 11 10 14 14 C 1.33001 * 109.96488 * 359.81216 * 13 12 11 15 15 C 1.34679 * 125.23352 * 90.00189 * 11 10 9 16 16 C 1.48205 * 122.79397 * 359.97438 * 15 11 10 17 17 C 1.39438 * 119.74001 * 179.75376 * 16 15 11 18 18 C 1.38318 * 119.06575 * 179.70055 * 17 16 15 19 19 C 1.38856 * 118.52172 * 0.54529 * 18 17 16 20 20 C 1.38174 * 119.38950 * 359.45469 * 19 18 17 21 21 N 1.31823 * 120.89547 * 0.28080 * 20 19 18 22 22 H 0.96992 * 120.00465 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47193 * 59.99802 * 9 7 2 24 24 H 1.08999 * 109.47087 * 299.99561 * 9 7 2 25 25 H 1.09000 * 109.47117 * 59.99559 * 10 9 7 26 26 H 1.08999 * 109.47045 * 299.99854 * 10 9 7 27 27 H 1.07999 * 125.02099 * 179.79475 * 13 12 11 28 28 H 1.07995 * 122.53661 * 179.97438 * 14 13 12 29 29 H 1.08002 * 120.46640 * 359.97438 * 17 16 15 30 30 H 1.07997 * 120.73603 * 180.28275 * 18 17 16 31 31 H 1.08002 * 120.30743 * 179.73515 * 19 18 17 32 32 H 1.07994 * 119.54767 * 180.25506 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4920 -4.9671 -0.0001 12 16 0.9812 -5.8443 1.4358 13 6 0.2611 -7.1096 0.4503 14 6 0.4244 -6.8290 -0.8395 15 6 1.1040 -5.6397 -1.1005 16 6 1.3813 -5.1588 -2.4747 17 6 0.9542 -5.9093 -3.5695 18 6 1.2150 -5.4443 -4.8458 19 6 1.9053 -4.2479 -4.9874 20 6 2.2995 -3.5548 -3.8589 21 7 2.0337 -4.0171 -2.6533 22 1 -0.4850 0.8399 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8722 -3.6042 0.8905 26 1 2.8721 -3.6042 -0.8895 27 1 -0.2397 -7.9857 0.8353 28 1 0.0587 -7.4736 -1.6250 29 1 0.4234 -6.8384 -3.4230 30 1 0.8926 -6.0016 -5.7129 31 1 2.1282 -3.8603 -5.9705 32 1 2.8330 -2.6220 -3.9661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259752695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:14 Heat of formation + Delta-G solvation = 61.420172 kcal Electronic energy + Delta-G solvation = -16351.392794 eV Core-core repulsion = 13789.351278 eV Total energy + Delta-G solvation = -2562.041516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97682 -37.39505 -33.86813 -32.34019 -31.45053 -31.00906 -27.99725 -25.41069 -23.61901 -23.03116 -21.83503 -20.70414 -18.73218 -16.84776 -16.35354 -16.12571 -15.57171 -15.16244 -14.42779 -14.38809 -13.83676 -13.38206 -12.85856 -12.70705 -12.44446 -12.29672 -11.88203 -11.67857 -11.54607 -10.91669 -10.84161 -10.59250 -10.41510 -9.89840 -9.60680 -9.55195 -9.22496 -9.04241 -8.63775 -8.22515 -8.06944 -7.63084 -5.89763 -3.90873 1.02370 1.56683 1.67461 1.99786 2.37584 3.10575 3.38235 3.42418 3.44986 4.32871 4.53083 4.58167 4.96338 5.12815 5.23958 5.37624 5.39591 5.45862 5.46516 5.82387 5.95543 6.02793 6.16504 6.28775 6.40124 6.52708 6.68293 6.82336 6.95188 7.04351 7.31393 7.81112 8.00357 8.12949 8.41703 8.53196 9.15192 9.71090 11.21617 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.007655 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.209572 B = 3657.073967 C = 5075.616182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.045 3.955 10 C -0.061 4.061 11 C -0.078 4.078 12 S 0.094 5.906 13 C -0.241 4.241 14 C -0.107 4.107 15 C -0.116 4.116 16 C 0.205 3.795 17 C -0.175 4.175 18 C -0.077 4.077 19 C -0.191 4.191 20 C 0.113 3.887 21 N -0.451 5.451 22 H 0.259 0.741 23 H 0.022 0.978 24 H 0.008 0.992 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.160 0.840 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -13.998 -6.258 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.007 3.993 10 C -0.101 4.101 11 C -0.197 4.197 12 S 0.359 5.641 13 C -0.376 4.376 14 C -0.138 4.138 15 C -0.127 4.127 16 C 0.067 3.933 17 C -0.195 4.195 18 C -0.103 4.103 19 C -0.211 4.211 20 C -0.045 4.045 21 N -0.160 5.160 22 H 0.069 0.931 23 H 0.040 0.960 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.127 0.873 27 H 0.177 0.823 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.113 -13.199 -3.942 13.936 hybrid contribution -0.229 0.194 -2.271 2.291 sum 1.884 -13.005 -6.213 14.536 Atomic orbital electron populations 1.69968 1.06006 1.26431 1.51238 1.24989 0.94777 0.98989 0.95669 0.86702 0.79566 0.83411 0.78548 1.20308 1.21448 1.20332 1.21153 0.92914 0.90779 1.49913 0.92731 1.18929 0.93376 0.89935 0.97045 1.20867 0.98530 0.87951 1.02721 1.25529 1.00231 1.00468 0.93512 1.84297 1.54182 1.15205 1.10406 1.25199 1.11081 1.04558 0.96721 1.19898 1.00696 0.96810 0.96348 1.17370 1.06972 0.97014 0.91337 1.19391 0.92530 0.89905 0.91513 1.21951 1.03083 1.01626 0.92851 1.21392 0.96171 0.95666 0.97038 1.22111 1.01818 0.96853 1.00319 1.22871 0.95579 0.98760 0.87258 1.67987 1.11667 1.11324 1.24976 0.93138 0.95959 0.97394 0.93028 0.87301 0.82272 0.84673 0.85268 0.85361 0.85307 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.21 4.85 -27.88 -0.14 1.08 16 10 C -0.06 -1.37 4.86 -27.88 -0.14 -1.50 16 11 C -0.08 -1.54 5.80 -35.57 -0.21 -1.74 16 12 S 0.09 1.56 23.31 -107.50 -2.51 -0.95 16 13 C -0.24 -3.39 11.18 28.92 0.32 -3.07 16 14 C -0.11 -1.58 9.52 -40.95 -0.39 -1.97 16 15 C -0.12 -2.10 5.79 -106.61 -0.62 -2.72 16 16 C 0.20 3.67 6.74 -82.95 -0.56 3.11 16 17 C -0.17 -2.48 9.53 -39.11 -0.37 -2.85 16 18 C -0.08 -0.96 10.16 -39.32 -0.40 -1.36 16 19 C -0.19 -2.50 10.11 -39.38 -0.40 -2.90 16 20 C 0.11 1.84 11.17 -17.58 -0.20 1.64 16 21 N -0.45 -8.74 6.58 -9.79 -0.06 -8.81 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.02 0.65 7.91 -51.93 -0.41 0.24 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.11 2.45 5.65 -51.93 -0.29 2.16 16 27 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.14 1.59 6.68 -52.49 -0.35 1.24 16 29 H 0.13 1.48 6.54 -52.49 -0.34 1.14 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 289.65 15.07 4.36 4.36 Total: -1.00 -32.50 289.65 -9.46 -41.96 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.48 Total: -0.96 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -3.50 Total: -25.72 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.67 Total: -35.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.51 Total: -0.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.50 -9.46 -41.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.381 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds