Wall clock time and date at job start Mon Mar 30 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99514 * 2 1 4 4 H 1.48493 * 109.46978 * 239.99739 * 3 2 1 5 5 H 1.48499 * 109.47535 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46970 * 119.99718 * 3 2 1 7 7 C 1.37874 * 120.00439 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47031 * 180.02562 * 10 9 7 12 12 S 1.75853 * 125.23340 * 270.14549 * 11 10 9 13 13 C 1.75809 * 91.16068 * 180.20686 * 12 11 10 14 14 C 1.33001 * 109.96488 * 359.81216 * 13 12 11 15 15 C 1.34679 * 125.23352 * 90.00189 * 11 10 9 16 16 C 1.48205 * 122.79397 * 359.97438 * 15 11 10 17 17 C 1.39438 * 119.74001 * 179.75376 * 16 15 11 18 18 C 1.38318 * 119.06575 * 179.70055 * 17 16 15 19 19 C 1.38856 * 118.52172 * 0.54529 * 18 17 16 20 20 C 1.38174 * 119.38950 * 359.45469 * 19 18 17 21 21 N 1.31823 * 120.89547 * 0.28080 * 20 19 18 22 22 H 0.96992 * 120.00465 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47193 * 59.99802 * 9 7 2 24 24 H 1.08999 * 109.47087 * 299.99561 * 9 7 2 25 25 H 1.09000 * 109.47117 * 59.99559 * 10 9 7 26 26 H 1.08999 * 109.47045 * 299.99854 * 10 9 7 27 27 H 1.07999 * 125.02099 * 179.79475 * 13 12 11 28 28 H 1.07995 * 122.53661 * 179.97438 * 14 13 12 29 29 H 1.08002 * 120.46640 * 359.97438 * 17 16 15 30 30 H 1.07997 * 120.73603 * 180.28275 * 18 17 16 31 31 H 1.08002 * 120.30743 * 179.73515 * 19 18 17 32 32 H 1.07994 * 119.54767 * 180.25506 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4920 -4.9671 -0.0001 12 16 0.9812 -5.8443 1.4358 13 6 0.2611 -7.1096 0.4503 14 6 0.4244 -6.8290 -0.8395 15 6 1.1040 -5.6397 -1.1005 16 6 1.3813 -5.1588 -2.4747 17 6 0.9542 -5.9093 -3.5695 18 6 1.2150 -5.4443 -4.8458 19 6 1.9053 -4.2479 -4.9874 20 6 2.2995 -3.5548 -3.8589 21 7 2.0337 -4.0171 -2.6533 22 1 -0.4850 0.8399 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8722 -3.6042 0.8905 26 1 2.8721 -3.6042 -0.8895 27 1 -0.2397 -7.9857 0.8353 28 1 0.0587 -7.4736 -1.6250 29 1 0.4234 -6.8384 -3.4230 30 1 0.8926 -6.0016 -5.7129 31 1 2.1282 -3.8603 -5.9705 32 1 2.8330 -2.6220 -3.9661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259752695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:14 Heat of formation + Delta-G solvation = 43.045401 kcal Electronic energy + Delta-G solvation = -16352.189584 eV Core-core repulsion = 13789.351278 eV Total energy + Delta-G solvation = -2562.838306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16231 -38.64623 -35.83848 -33.89218 -32.98416 -32.23631 -29.66015 -27.07474 -25.18874 -24.22428 -23.13296 -22.49904 -19.96660 -18.64599 -17.87804 -17.42690 -16.87739 -16.51702 -16.29953 -15.51197 -15.15673 -14.98911 -14.49429 -13.96206 -13.87471 -13.69508 -13.61468 -13.18696 -12.83825 -12.73091 -12.60415 -12.47724 -11.78954 -11.65806 -11.54080 -11.22544 -10.77706 -10.51827 -10.43243 -9.91868 -9.39714 -8.91735 -8.16162 -6.26858 -0.24197 0.42937 0.56236 0.71173 1.13803 1.38300 1.42445 1.50137 1.89208 2.42330 3.13412 3.16175 3.41885 3.93113 4.07098 4.09918 4.27135 4.33438 4.38877 4.55524 4.72973 4.74838 4.94095 4.99251 5.14057 5.17988 5.27256 5.33534 5.47431 5.53677 5.58621 5.83233 5.87825 5.99465 6.28753 6.87922 7.24228 7.40623 8.95625 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.007655 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.209572 B = 3657.073967 C = 5075.616182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.064 3.936 10 C -0.043 4.043 11 C -0.139 4.139 12 S 0.081 5.919 13 C -0.211 4.211 14 C -0.118 4.118 15 C -0.106 4.106 16 C 0.161 3.839 17 C -0.165 4.165 18 C -0.072 4.072 19 C -0.174 4.174 20 C 0.078 3.922 21 N -0.499 5.499 22 H 0.262 0.738 23 H -0.012 1.012 24 H -0.026 1.026 25 H 0.044 0.956 26 H 0.102 0.898 27 H 0.202 0.798 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.175 0.825 31 H 0.165 0.835 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -15.813 -8.122 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.258 4.258 12 S 0.346 5.654 13 C -0.346 4.346 14 C -0.148 4.148 15 C -0.118 4.118 16 C 0.023 3.977 17 C -0.185 4.185 18 C -0.097 4.097 19 C -0.194 4.194 20 C -0.079 4.079 21 N -0.208 5.208 22 H 0.070 0.930 23 H 0.007 0.993 24 H -0.008 1.008 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.219 0.781 28 H 0.192 0.808 29 H 0.180 0.820 30 H 0.192 0.808 31 H 0.182 0.818 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.907 -15.020 -5.800 16.213 hybrid contribution -0.211 0.665 -1.801 1.932 sum 1.697 -14.355 -7.601 16.331 Atomic orbital electron populations 1.70122 1.07879 1.27585 1.52060 1.25958 0.95703 1.03196 0.94861 0.85517 0.78279 0.78092 0.79251 1.19005 1.20809 1.19192 1.21558 0.93299 0.92054 1.49978 0.92406 1.18610 0.93365 0.91902 0.93539 1.20383 0.97450 0.88392 1.02002 1.25202 1.03856 1.00986 0.95768 1.84202 1.54796 1.16292 1.10124 1.25712 1.08872 1.04114 0.95871 1.20202 1.00684 0.96142 0.97748 1.17894 1.05142 0.97487 0.91302 1.19702 0.94662 0.90722 0.92602 1.22321 1.01782 1.01998 0.92424 1.21946 0.94694 0.95259 0.97845 1.22482 0.99822 0.96509 1.00598 1.23080 0.97217 0.99724 0.87869 1.67786 1.13149 1.12849 1.26999 0.92963 0.99346 1.00802 0.93723 0.88006 0.78064 0.80751 0.82040 0.80765 0.81792 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.29 21.45 0.28 -59.53 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 3 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.53 -32.13 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.06 3.69 4.85 29.85 0.14 3.84 16 10 C -0.04 -2.07 4.86 29.85 0.15 -1.92 16 11 C -0.14 -5.74 5.80 24.87 0.14 -5.60 16 12 S 0.08 2.70 23.31 -56.49 -1.32 1.39 16 13 C -0.21 -5.37 11.18 66.65 0.75 -4.62 16 14 C -0.12 -3.20 9.52 21.39 0.20 -3.00 16 15 C -0.11 -3.85 5.79 -21.16 -0.12 -3.97 16 16 C 0.16 5.77 6.74 41.95 0.28 6.05 16 17 C -0.17 -4.23 9.53 22.58 0.22 -4.02 16 18 C -0.07 -1.52 10.16 22.44 0.23 -1.29 16 19 C -0.17 -4.18 10.11 22.40 0.23 -3.95 16 20 C 0.08 2.61 11.17 84.68 0.95 3.55 16 21 N -0.50 -20.20 6.58 -184.89 -1.22 -21.41 16 22 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 23 H -0.01 -0.76 7.91 -2.38 -0.02 -0.78 16 24 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 25 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.10 4.97 5.65 -2.39 -0.01 4.95 16 27 H 0.20 3.37 8.06 -2.91 -0.02 3.34 16 28 H 0.18 3.26 6.68 -2.91 -0.02 3.24 16 29 H 0.16 2.95 6.54 -2.91 -0.02 2.93 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.15 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -76.05 289.65 4.76 -71.30 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.12 Total: 6.51 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 3.85 Total: -46.37 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -0.93 Total: -80.95 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.32 Total: 1.39 kcal Total: -76.05 4.76 -71.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.341 kcal (2) G-P(sol) polarization free energy of solvation -76.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds