Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99804 * 2 1 4 4 C 1.46893 * 111.00117 * 123.95684 * 2 1 3 5 5 H 1.09009 * 109.47136 * 40.71134 * 4 2 1 6 6 C 1.52999 * 109.47275 * 280.71059 * 4 2 1 7 7 C 1.50698 * 109.47137 * 66.45641 * 6 4 2 8 8 H 1.08004 * 120.00080 * 5.67564 * 7 6 4 9 9 C 1.37882 * 120.00274 * 185.67490 * 7 6 4 10 10 N 1.31511 * 119.99540 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99917 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46843 * 60.00436 * 11 9 7 13 13 H 1.48502 * 109.46804 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47240 * 300.00029 * 11 9 7 15 15 C 1.50701 * 109.47021 * 160.70942 * 4 2 1 16 16 C 1.33355 * 125.18887 * 216.65299 * 15 4 2 17 17 C 1.38472 * 114.92336 * 179.77374 * 16 15 4 18 18 C 1.33495 * 114.88926 * 0.49852 * 17 16 15 19 19 Cl 1.73600 * 125.21019 * 179.79628 * 18 17 16 20 20 S 1.75882 * 125.18715 * 36.69987 * 15 4 2 21 21 H 1.08999 * 109.47229 * 310.53894 * 1 2 3 22 22 H 1.08990 * 109.47427 * 70.54643 * 1 2 3 23 23 H 1.09004 * 109.47113 * 190.54415 * 1 2 3 24 24 H 1.08996 * 109.47044 * 175.82554 * 3 2 1 25 25 H 1.08995 * 109.47417 * 295.83263 * 3 2 1 26 26 H 1.09005 * 109.47184 * 55.83057 * 3 2 1 27 27 H 1.09006 * 109.47293 * 186.45331 * 6 4 2 28 28 H 1.08995 * 109.47329 * 306.45524 * 6 4 2 29 29 H 0.97001 * 119.99936 * 180.02562 * 10 9 7 30 30 H 1.07994 * 122.53285 * 0.06160 * 16 15 4 31 31 H 1.08010 * 122.55480 * 180.31523 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.3984 -1.6675 1.2760 6 6 1.9280 0.0900 2.4038 7 6 0.4864 0.3402 2.7648 8 1 -0.3017 -0.1444 2.2076 9 6 0.1736 1.1879 3.8063 10 7 1.1333 1.7784 4.4843 11 14 -1.6133 1.4986 4.2532 12 1 -2.2599 0.2155 4.6283 13 1 -1.6803 2.4399 5.3998 14 1 -2.3201 2.0868 3.0872 15 6 3.4275 -1.1488 0.8656 16 6 3.9957 -2.3015 1.2218 17 6 5.3258 -2.4328 0.8596 18 6 5.8399 -1.3810 0.2181 19 17 7.4752 -1.2572 -0.3512 20 16 4.6046 -0.1430 0.0312 21 1 -0.3633 0.6679 0.7810 22 1 -0.3634 0.3422 -0.9689 23 1 -0.3633 -1.0104 0.1881 24 1 3.0825 1.3433 0.0748 25 1 1.7076 1.8711 -0.9249 26 1 1.5868 1.9175 0.8503 27 1 2.4221 -0.4330 3.2227 28 1 2.4285 1.0418 2.2261 29 1 0.9133 2.3745 5.2173 30 1 3.4578 -3.0758 1.7484 31 1 5.9040 -3.3176 1.0820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259771064.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = 34.964354 kcal Electronic energy + Delta-G solvation = -15338.671828 eV Core-core repulsion = 12773.050252 eV Total energy + Delta-G solvation = -2565.621576 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.34680 -37.11297 -36.10989 -32.80538 -30.67457 -28.14064 -27.09206 -25.62819 -23.12002 -22.47866 -20.00396 -18.97322 -17.06894 -16.30331 -15.54651 -14.86641 -14.72175 -14.06341 -13.82486 -13.37674 -12.99826 -12.69074 -12.43640 -12.08113 -11.61560 -11.47953 -11.35161 -11.16450 -11.05590 -10.85145 -10.72379 -10.64440 -10.22743 -9.95633 -9.89832 -9.21724 -8.52454 -8.13860 -8.10252 -7.41256 -6.14449 -4.17481 1.26063 1.50362 2.29547 2.57473 3.01472 3.22772 3.29080 3.30161 4.32371 4.67978 5.20319 5.37116 5.66994 5.74081 5.77802 5.92805 6.19354 6.24533 6.30862 6.37365 6.51791 6.57323 6.66600 6.74490 6.85275 7.31495 7.45033 7.66596 7.80155 7.86141 8.19028 8.85851 9.45554 10.96167 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.005619 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.244415 B = 4981.564304 C = 5212.746222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.535 5.535 3 C 0.023 3.977 4 C 0.141 3.859 5 H 0.090 0.910 6 C 0.001 3.999 7 C -0.531 4.531 8 H 0.068 0.932 9 C 0.063 3.937 10 N -0.888 5.888 11 Si 0.889 3.111 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.113 4.113 16 C -0.160 4.160 17 C -0.110 4.110 18 C -0.188 4.188 19 Cl -0.039 7.039 20 S 0.169 5.831 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.143 0.857 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.829 -4.616 -8.504 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.258 5.258 3 C -0.126 4.126 4 C 0.031 3.969 5 H 0.108 0.892 6 C -0.038 4.038 7 C -0.568 4.568 8 H 0.086 0.914 9 C -0.140 4.140 10 N -0.527 5.527 11 Si 0.717 3.283 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.232 4.232 16 C -0.189 4.189 17 C -0.143 4.143 18 C -0.330 4.330 19 Cl -0.011 7.011 20 S 0.432 5.568 21 H 0.090 0.910 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.175 -3.292 -9.503 11.802 hybrid contribution -0.849 -0.873 1.760 2.140 sum 5.326 -4.165 -7.744 10.280 Atomic orbital electron populations 1.22679 0.87188 1.02256 1.00935 1.62454 1.08755 1.13349 1.41246 1.22496 0.97970 0.90581 1.01544 1.20587 0.86369 0.98199 0.91754 0.89200 1.19793 0.97961 0.95241 0.90782 1.21315 0.91932 1.27580 1.16022 0.91401 1.24994 0.97121 0.95828 0.96055 1.69955 1.31880 1.29818 1.20999 0.86702 0.85219 0.78241 0.78173 1.20127 1.21243 1.20108 1.25025 1.00158 0.96793 1.01194 1.19794 0.94315 0.98808 1.05999 1.20029 0.95532 0.98639 1.00121 1.25695 0.91759 1.03334 1.12221 1.98312 1.16951 1.97920 1.87892 1.84514 0.98189 1.17221 1.56900 0.91005 0.93410 0.92521 0.93078 0.92348 0.92008 0.96224 0.94843 0.92756 0.83970 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.23 60.07 0.49 0.80 16 2 N -0.53 -9.98 4.83 -244.59 -1.18 -11.16 16 3 C 0.02 0.43 8.08 60.06 0.49 0.91 16 4 C 0.14 2.79 2.37 -68.87 -0.16 2.63 16 5 H 0.09 1.77 7.66 -51.92 -0.40 1.37 16 6 C 0.00 0.02 3.93 -27.88 -0.11 -0.09 16 7 C -0.53 -13.46 6.90 -34.44 -0.24 -13.69 16 8 H 0.07 1.64 5.25 -52.48 -0.28 1.36 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 11 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 15 C -0.11 -2.04 5.46 -36.01 -0.20 -2.24 16 16 C -0.16 -2.62 10.04 -41.20 -0.41 -3.03 16 17 C -0.11 -1.67 10.13 -41.15 -0.42 -2.08 16 18 C -0.19 -2.93 7.10 29.07 0.21 -2.72 16 19 Cl -0.04 -0.53 29.29 -51.86 -1.52 -2.05 16 20 S 0.17 2.81 19.71 -107.50 -2.12 0.69 16 21 H 0.07 1.45 5.21 -51.93 -0.27 1.18 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 24 H 0.05 0.92 4.38 -31.27 -0.14 0.78 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.30 6.23 -51.93 -0.32 0.98 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.86 6.09 -51.93 -0.32 0.54 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -27.08 277.02 -8.75 -35.82 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.37 Total: -0.37 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -0.45 Total: -17.94 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.45 Total: -35.68 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.12 Total: 0.69 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.52 Total: -2.05 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.08 -8.75 -35.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771064.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.786 kcal (2) G-P(sol) polarization free energy of solvation -27.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds