Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99804 * 2 1 4 4 C 1.46893 * 111.00117 * 123.95684 * 2 1 3 5 5 H 1.09009 * 109.47136 * 40.71134 * 4 2 1 6 6 C 1.52999 * 109.47275 * 280.71059 * 4 2 1 7 7 C 1.50698 * 109.47137 * 66.45641 * 6 4 2 8 8 H 1.08004 * 120.00080 * 5.67564 * 7 6 4 9 9 C 1.37882 * 120.00274 * 185.67490 * 7 6 4 10 10 N 1.31511 * 119.99540 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99917 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46843 * 60.00436 * 11 9 7 13 13 H 1.48502 * 109.46804 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47240 * 300.00029 * 11 9 7 15 15 C 1.50701 * 109.47021 * 160.70942 * 4 2 1 16 16 C 1.33355 * 125.18887 * 216.65299 * 15 4 2 17 17 C 1.38472 * 114.92336 * 179.77374 * 16 15 4 18 18 C 1.33495 * 114.88926 * 0.49852 * 17 16 15 19 19 Cl 1.73600 * 125.21019 * 179.79628 * 18 17 16 20 20 S 1.75882 * 125.18715 * 36.69987 * 15 4 2 21 21 H 1.08999 * 109.47229 * 310.53894 * 1 2 3 22 22 H 1.08990 * 109.47427 * 70.54643 * 1 2 3 23 23 H 1.09004 * 109.47113 * 190.54415 * 1 2 3 24 24 H 1.08996 * 109.47044 * 175.82554 * 3 2 1 25 25 H 1.08995 * 109.47417 * 295.83263 * 3 2 1 26 26 H 1.09005 * 109.47184 * 55.83057 * 3 2 1 27 27 H 1.09006 * 109.47293 * 186.45331 * 6 4 2 28 28 H 1.08995 * 109.47329 * 306.45524 * 6 4 2 29 29 H 0.97001 * 119.99936 * 180.02562 * 10 9 7 30 30 H 1.07994 * 122.53285 * 0.06160 * 16 15 4 31 31 H 1.08010 * 122.55480 * 180.31523 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.3984 -1.6675 1.2760 6 6 1.9280 0.0900 2.4038 7 6 0.4864 0.3402 2.7648 8 1 -0.3017 -0.1444 2.2076 9 6 0.1736 1.1879 3.8063 10 7 1.1333 1.7784 4.4843 11 14 -1.6133 1.4986 4.2532 12 1 -2.2599 0.2155 4.6283 13 1 -1.6803 2.4399 5.3998 14 1 -2.3201 2.0868 3.0872 15 6 3.4275 -1.1488 0.8656 16 6 3.9957 -2.3015 1.2218 17 6 5.3258 -2.4328 0.8596 18 6 5.8399 -1.3810 0.2181 19 17 7.4752 -1.2572 -0.3512 20 16 4.6046 -0.1430 0.0312 21 1 -0.3633 0.6679 0.7810 22 1 -0.3634 0.3422 -0.9689 23 1 -0.3633 -1.0104 0.1881 24 1 3.0825 1.3433 0.0748 25 1 1.7076 1.8711 -0.9249 26 1 1.5868 1.9175 0.8503 27 1 2.4221 -0.4330 3.2227 28 1 2.4285 1.0418 2.2261 29 1 0.9133 2.3745 5.2173 30 1 3.4578 -3.0758 1.7484 31 1 5.9040 -3.3176 1.0820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771064.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = 19.216809 kcal Electronic energy + Delta-G solvation = -15339.354692 eV Core-core repulsion = 12773.050252 eV Total energy + Delta-G solvation = -2566.304441 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82535 -38.42013 -37.33449 -34.78195 -32.19439 -29.85551 -28.56332 -27.21485 -24.55025 -24.19028 -21.51400 -20.28545 -18.75977 -17.96678 -16.89207 -16.66785 -16.25991 -15.63043 -15.27919 -14.66589 -14.44783 -14.25795 -14.09997 -13.41244 -13.14709 -12.99510 -12.90593 -12.84347 -12.56824 -12.42137 -12.23772 -12.14620 -11.86133 -11.72047 -11.24657 -11.08196 -10.56154 -9.44424 -9.42651 -8.98668 -8.18292 -6.26317 -0.03645 0.23701 1.00603 1.33882 1.41406 1.42141 1.49329 1.75090 2.40485 3.12327 3.24899 3.94631 4.32279 4.38802 4.43093 4.57881 4.71076 4.78049 4.80900 5.01320 5.04143 5.12124 5.24647 5.30995 5.42901 5.46790 5.51858 5.77556 6.14697 6.20141 6.24162 6.85820 7.40427 8.92988 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.005619 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.244415 B = 4981.564304 C = 5212.746222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.028 3.972 4 C 0.153 3.847 5 H 0.091 0.909 6 C 0.011 3.989 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.952 3.048 12 H -0.268 1.268 13 H -0.291 1.291 14 H -0.264 1.264 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.111 4.111 18 C -0.187 4.187 19 Cl -0.019 7.019 20 S 0.159 5.841 21 H 0.045 0.955 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.027 0.973 27 H -0.013 1.013 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.157 0.843 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.660 -5.735 -9.727 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.252 5.252 3 C -0.121 4.121 4 C 0.042 3.958 5 H 0.109 0.891 6 C -0.028 4.028 7 C -0.568 4.568 8 H 0.098 0.902 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.778 3.222 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.189 1.189 15 C -0.265 4.265 16 C -0.180 4.180 17 C -0.143 4.143 18 C -0.329 4.329 19 Cl 0.009 6.991 20 S 0.422 5.578 21 H 0.064 0.936 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.045 0.955 27 H 0.005 0.995 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.175 0.825 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.994 -4.418 -10.748 13.076 hybrid contribution -0.680 -0.563 2.090 2.269 sum 5.314 -4.982 -8.658 11.315 Atomic orbital electron populations 1.22675 0.86568 1.02226 1.01483 1.62546 1.09276 1.13228 1.40134 1.22458 0.98204 0.90188 1.01288 1.20289 0.87998 0.97361 0.90104 0.89115 1.19624 0.96682 0.94530 0.91961 1.21735 0.93005 1.26613 1.15408 0.90150 1.25831 1.01086 0.95930 0.96285 1.70101 1.34069 1.31092 1.21891 0.85685 0.80440 0.78198 0.77898 1.19272 1.21716 1.18916 1.24873 0.99751 0.98177 1.03705 1.20102 0.94926 0.98418 1.04583 1.20281 0.95113 0.99457 0.99462 1.25793 0.92483 1.02796 1.11868 1.98322 1.15272 1.97842 1.87631 1.84419 0.98640 1.17796 1.56948 0.93644 0.90790 0.91648 0.92783 0.89790 0.95468 0.99453 0.97267 0.93064 0.82525 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.23 127.69 1.05 1.67 16 2 N -0.53 -19.30 4.83 -927.74 -4.49 -23.78 16 3 C 0.03 1.02 8.08 127.69 1.03 2.05 16 4 C 0.15 6.02 2.37 44.17 0.10 6.13 16 5 H 0.09 3.51 7.66 -2.38 -0.02 3.49 16 6 C 0.01 0.52 3.93 29.85 0.12 0.64 16 7 C -0.53 -27.22 6.90 25.60 0.18 -27.05 16 8 H 0.08 3.85 5.25 -2.91 -0.02 3.84 16 9 C 0.01 0.37 5.46 84.66 0.46 0.83 16 10 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 11 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 15 C -0.15 -5.20 5.46 24.58 0.13 -5.07 16 16 C -0.15 -4.68 10.04 21.22 0.21 -4.47 16 17 C -0.11 -3.08 10.13 21.25 0.22 -2.87 16 18 C -0.19 -5.46 7.10 66.74 0.47 -4.99 16 19 Cl -0.02 -0.48 29.29 -2.72 -0.08 -0.56 16 20 S 0.16 5.17 19.71 -56.49 -1.11 4.05 16 21 H 0.05 1.80 5.21 -2.39 -0.01 1.78 16 22 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.06 2.09 7.67 -2.38 -0.02 2.07 16 24 H 0.05 1.95 4.38 -15.53 -0.07 1.88 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.03 1.17 6.23 -2.38 -0.01 1.16 16 27 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 28 H 0.01 0.49 6.09 -2.39 -0.01 0.47 16 29 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.16 4.32 8.06 -2.91 -0.02 4.29 16 31 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -58.29 277.02 1.70 -56.59 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.08 Total: 7.02 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 3.98 Total: -33.11 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -4.20 Total: -78.07 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.11 Total: 4.05 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -58.29 1.70 -56.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771064.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.812 kcal (2) G-P(sol) polarization free energy of solvation -58.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds