Wall clock time and date at job start Mon Mar 30 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00227 * 2 1 4 4 C 1.46905 * 110.99881 * 123.95026 * 2 1 3 5 5 H 1.09000 * 109.47109 * 294.65397 * 4 2 1 6 6 C 1.53004 * 109.46978 * 54.65672 * 4 2 1 7 7 C 1.50697 * 109.46779 * 184.74084 * 6 4 2 8 8 H 1.07995 * 120.00457 * 1.40190 * 7 6 4 9 9 C 1.37881 * 119.99705 * 181.40681 * 7 6 4 10 10 N 1.31511 * 120.00147 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00046 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47120 * 90.00042 * 11 9 7 13 13 H 1.48494 * 109.46974 * 209.99790 * 11 9 7 14 14 H 1.48500 * 109.46968 * 330.00121 * 11 9 7 15 15 C 1.50701 * 109.47056 * 174.65375 * 4 2 1 16 16 C 1.33348 * 125.18544 * 140.00151 * 15 4 2 17 17 C 1.38471 * 114.92785 * 179.97438 * 16 15 4 18 18 C 1.33497 * 114.88819 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 125.21334 * 180.02562 * 18 17 16 20 20 S 1.75877 * 125.19251 * 319.69561 * 15 4 2 21 21 H 1.08991 * 109.47442 * 289.43611 * 1 2 3 22 22 H 1.09000 * 109.46751 * 49.44076 * 1 2 3 23 23 H 1.08998 * 109.46931 * 169.42966 * 1 2 3 24 24 H 1.08993 * 109.47485 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.46660 * 299.99801 * 3 2 1 26 26 H 1.08996 * 109.46919 * 59.99400 * 3 2 1 27 27 H 1.08997 * 109.47101 * 304.74037 * 6 4 2 28 28 H 1.09003 * 109.46648 * 64.74002 * 6 4 2 29 29 H 0.97000 * 120.00416 * 180.02562 * 10 9 7 30 30 H 1.07995 * 122.53973 * 359.97438 * 16 15 4 31 31 H 1.08005 * 122.56109 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.7254 -0.2664 2.0681 6 6 1.3991 -2.1749 1.1235 7 6 1.8472 -2.9223 2.3530 8 1 2.4742 -2.4332 3.0837 9 6 1.4568 -4.2307 2.5449 10 7 1.8482 -4.8832 3.6175 11 14 0.3730 -5.0770 1.2805 12 1 1.2261 -5.7417 0.2628 13 1 -0.4746 -6.0924 1.9555 14 1 -0.4940 -4.0696 0.6181 15 6 3.4961 -0.8545 1.0322 16 6 4.3456 -0.7524 2.0550 17 6 5.6834 -0.8664 1.7162 18 6 5.9192 -1.0618 0.4168 19 17 7.4903 -1.2414 -0.2995 20 16 4.3939 -1.1160 -0.4574 21 1 -0.3634 0.3419 0.9690 22 1 -0.3633 0.6682 -0.7808 23 1 -0.3633 -1.0102 -0.1885 24 1 3.0850 1.3424 0.0005 25 1 1.6460 1.8947 -0.8900 26 1 1.6459 1.8948 0.8899 27 1 0.3112 -2.1089 1.1148 28 1 1.7382 -2.7040 0.2329 29 1 1.5738 -5.8037 3.7524 30 1 4.0153 -0.5929 3.0708 31 1 6.4757 -0.8030 2.4475 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259771066.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:56 Heat of formation + Delta-G solvation = 31.986793 kcal Electronic energy + Delta-G solvation = -15328.208029 eV Core-core repulsion = 12762.457336 eV Total energy + Delta-G solvation = -2565.750693 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.38358 -36.95225 -35.99460 -33.08061 -31.04415 -28.73499 -26.90722 -25.59606 -23.13220 -22.18650 -19.99993 -19.08246 -17.15102 -16.64661 -15.47317 -14.81602 -14.69473 -14.22590 -13.82546 -13.40639 -12.92295 -12.88921 -12.64482 -12.27663 -12.02771 -11.76416 -11.49162 -11.31697 -11.23140 -10.94043 -10.74633 -10.33475 -10.19568 -10.00201 -9.85831 -9.25161 -8.56460 -8.03029 -8.00074 -7.95423 -6.07003 -4.05285 1.32229 1.58264 2.38949 2.64616 3.15476 3.29672 3.37177 3.39044 4.30432 4.42542 5.20112 5.31533 5.43606 5.59579 5.70849 5.77640 5.85170 5.86445 6.04837 6.09439 6.22622 6.32349 6.41342 6.66515 6.79145 6.98123 7.15914 7.37424 7.45103 7.74889 8.47618 8.96745 9.54535 11.05918 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.008297 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.602196 B = 3374.017282 C = 4327.602128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.160 3.840 5 H 0.059 0.941 6 C -0.003 4.003 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.266 1.266 15 C -0.107 4.107 16 C -0.140 4.140 17 C -0.105 4.105 18 C -0.177 4.177 19 Cl -0.037 7.037 20 S 0.165 5.835 21 H 0.027 0.973 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.027 0.973 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.143 0.857 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 10.727 -7.385 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.274 5.274 3 C -0.127 4.127 4 C 0.050 3.950 5 H 0.077 0.923 6 C -0.041 4.041 7 C -0.556 4.556 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.190 1.190 15 C -0.225 4.225 16 C -0.169 4.169 17 C -0.139 4.139 18 C -0.320 4.320 19 Cl -0.009 7.009 20 S 0.428 5.572 21 H 0.045 0.955 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.752 10.108 -9.311 14.246 hybrid contribution -0.172 -0.181 1.705 1.723 sum 3.579 9.927 -7.606 13.008 Atomic orbital electron populations 1.22363 0.87115 1.02771 0.99828 1.62070 1.08211 1.13117 1.43952 1.22425 1.01008 0.89257 1.00027 1.20323 0.86644 0.97157 0.90850 0.92322 1.19743 0.96111 0.89880 0.98387 1.21006 1.32185 0.97233 1.05196 0.90570 1.24932 0.95701 0.97193 0.95174 1.69893 1.45645 1.11156 1.27087 0.86873 0.81247 0.79715 0.82053 1.20142 1.21401 1.19029 1.24438 0.98987 1.03951 0.95162 1.19826 0.91043 1.05826 1.00251 1.20060 0.97615 1.02159 0.94027 1.25208 0.91190 1.17888 0.97731 1.98312 1.22898 1.96530 1.83131 1.84277 0.92219 1.71216 1.09511 0.95454 0.92069 0.90612 0.91399 0.91784 0.95924 0.95496 0.95921 0.92710 0.83915 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.90 60.06 0.53 0.94 16 2 N -0.55 -9.07 4.66 -244.59 -1.14 -10.21 16 3 C 0.02 0.30 9.35 60.07 0.56 0.86 16 4 C 0.16 3.07 1.92 -68.86 -0.13 2.94 16 5 H 0.06 1.16 8.12 -51.93 -0.42 0.73 16 6 C 0.00 -0.07 3.25 -27.88 -0.09 -0.17 16 7 C -0.52 -14.04 9.13 -34.44 -0.31 -14.36 16 8 H 0.08 2.20 7.22 -52.49 -0.38 1.82 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 11 Si 0.87 21.39 27.44 -169.99 -4.66 16.72 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.18 6.58 56.52 0.37 -5.80 16 15 C -0.11 -2.00 3.51 -36.02 -0.13 -2.13 16 16 C -0.14 -2.54 9.31 -41.20 -0.38 -2.92 16 17 C -0.11 -1.75 10.13 -41.15 -0.42 -2.16 16 18 C -0.18 -2.92 7.10 29.07 0.21 -2.72 16 19 Cl -0.04 -0.53 29.29 -51.86 -1.52 -2.05 16 20 S 0.17 2.85 22.57 -107.50 -2.43 0.42 16 21 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 22 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 23 H 0.08 1.22 6.52 -51.93 -0.34 0.88 16 24 H 0.07 0.96 6.56 -51.93 -0.34 0.62 16 25 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.03 0.61 5.36 -51.93 -0.28 0.33 16 28 H 0.02 0.54 7.49 -51.93 -0.39 0.15 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 31 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 284.92 15.07 4.29 4.29 Total: -1.00 -29.05 284.92 -8.78 -37.84 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.84 Total: -2.88 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.26 Total: -17.78 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.37 Total: -36.57 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.66 Total: 16.72 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.43 Total: 0.42 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.52 Total: -2.05 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.05 -8.78 -37.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771066.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.823 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds