Wall clock time and date at job start Mon Mar 30 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00227 * 2 1 4 4 C 1.46905 * 110.99881 * 123.95026 * 2 1 3 5 5 H 1.09000 * 109.47109 * 294.65397 * 4 2 1 6 6 C 1.53004 * 109.46978 * 54.65672 * 4 2 1 7 7 C 1.50697 * 109.46779 * 184.74084 * 6 4 2 8 8 H 1.07995 * 120.00457 * 1.40190 * 7 6 4 9 9 C 1.37881 * 119.99705 * 181.40681 * 7 6 4 10 10 N 1.31511 * 120.00147 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00046 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47120 * 90.00042 * 11 9 7 13 13 H 1.48494 * 109.46974 * 209.99790 * 11 9 7 14 14 H 1.48500 * 109.46968 * 330.00121 * 11 9 7 15 15 C 1.50701 * 109.47056 * 174.65375 * 4 2 1 16 16 C 1.33348 * 125.18544 * 140.00151 * 15 4 2 17 17 C 1.38471 * 114.92785 * 179.97438 * 16 15 4 18 18 C 1.33497 * 114.88819 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 125.21334 * 180.02562 * 18 17 16 20 20 S 1.75877 * 125.19251 * 319.69561 * 15 4 2 21 21 H 1.08991 * 109.47442 * 289.43611 * 1 2 3 22 22 H 1.09000 * 109.46751 * 49.44076 * 1 2 3 23 23 H 1.08998 * 109.46931 * 169.42966 * 1 2 3 24 24 H 1.08993 * 109.47485 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.46660 * 299.99801 * 3 2 1 26 26 H 1.08996 * 109.46919 * 59.99400 * 3 2 1 27 27 H 1.08997 * 109.47101 * 304.74037 * 6 4 2 28 28 H 1.09003 * 109.46648 * 64.74002 * 6 4 2 29 29 H 0.97000 * 120.00416 * 180.02562 * 10 9 7 30 30 H 1.07995 * 122.53973 * 359.97438 * 16 15 4 31 31 H 1.08005 * 122.56109 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.7254 -0.2664 2.0681 6 6 1.3991 -2.1749 1.1235 7 6 1.8472 -2.9223 2.3530 8 1 2.4742 -2.4332 3.0837 9 6 1.4568 -4.2307 2.5449 10 7 1.8482 -4.8832 3.6175 11 14 0.3730 -5.0770 1.2805 12 1 1.2261 -5.7417 0.2628 13 1 -0.4746 -6.0924 1.9555 14 1 -0.4940 -4.0696 0.6181 15 6 3.4961 -0.8545 1.0322 16 6 4.3456 -0.7524 2.0550 17 6 5.6834 -0.8664 1.7162 18 6 5.9192 -1.0618 0.4168 19 17 7.4903 -1.2414 -0.2995 20 16 4.3939 -1.1160 -0.4574 21 1 -0.3634 0.3419 0.9690 22 1 -0.3633 0.6682 -0.7808 23 1 -0.3633 -1.0102 -0.1885 24 1 3.0850 1.3424 0.0005 25 1 1.6460 1.8947 -0.8900 26 1 1.6459 1.8948 0.8899 27 1 0.3112 -2.1089 1.1148 28 1 1.7382 -2.7040 0.2329 29 1 1.5738 -5.8037 3.7524 30 1 4.0153 -0.5929 3.0708 31 1 6.4757 -0.8030 2.4475 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771066.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:56 Heat of formation + Delta-G solvation = 14.533358 kcal Electronic energy + Delta-G solvation = -15328.964867 eV Core-core repulsion = 12762.457336 eV Total energy + Delta-G solvation = -2566.507530 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.77893 -38.24721 -37.27013 -35.06136 -32.74681 -30.25429 -28.17579 -27.17330 -24.47651 -23.86116 -21.52690 -20.48516 -18.97461 -18.21819 -16.85935 -16.45310 -16.22632 -15.47701 -15.42992 -14.80526 -14.61948 -14.28749 -14.24730 -13.69243 -13.33413 -13.12799 -13.08503 -12.67839 -12.59802 -12.37354 -12.26159 -11.90213 -11.77609 -11.64053 -11.55884 -11.29591 -10.72602 -9.35907 -9.33897 -9.30780 -8.24474 -6.26334 -0.05224 0.24911 1.01667 1.32946 1.36434 1.37729 1.47661 1.76871 2.37745 3.01736 3.11381 3.83682 4.28804 4.32486 4.42331 4.52222 4.56770 4.62855 4.78384 4.80802 5.00693 5.03239 5.03811 5.14734 5.29137 5.39275 5.44115 5.61654 6.05597 6.16854 6.34360 6.80152 7.36607 8.91394 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.008297 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.602196 B = 3374.017282 C = 4327.602128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.023 3.977 4 C 0.168 3.832 5 H 0.047 0.953 6 C 0.003 3.997 7 C -0.514 4.514 8 H 0.046 0.954 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.933 3.067 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.244 1.244 15 C -0.130 4.130 16 C -0.148 4.148 17 C -0.112 4.112 18 C -0.177 4.177 19 Cl -0.015 7.015 20 S 0.176 5.824 21 H 0.027 0.973 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.033 0.967 28 H 0.016 0.984 29 H 0.264 0.736 30 H 0.138 0.862 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 11.617 -9.249 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.125 4.125 4 C 0.058 3.942 5 H 0.065 0.935 6 C -0.035 4.035 7 C -0.553 4.553 8 H 0.064 0.936 9 C -0.185 4.185 10 N -0.588 5.588 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.167 1.167 15 C -0.248 4.248 16 C -0.178 4.178 17 C -0.145 4.145 18 C -0.320 4.320 19 Cl 0.013 6.987 20 S 0.438 5.562 21 H 0.045 0.955 22 H 0.110 0.890 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.542 11.028 -11.192 16.107 hybrid contribution -0.011 -0.387 2.303 2.336 sum 3.531 10.641 -8.888 14.308 Atomic orbital electron populations 1.22429 0.86096 1.02760 1.00969 1.62053 1.09209 1.14530 1.42143 1.22470 1.00696 0.87820 1.01471 1.20000 0.87087 0.95413 0.91650 0.93528 1.19603 0.96445 0.91683 0.95777 1.21294 1.30761 0.97335 1.05899 0.93598 1.25788 0.97418 0.98191 0.97117 1.70038 1.47763 1.11623 1.29372 0.85907 0.79752 0.78987 0.79579 1.19863 1.21203 1.16748 1.24474 0.98958 1.05179 0.96208 1.19983 0.91990 1.05723 1.00078 1.20221 0.97453 1.02110 0.94688 1.25329 0.92042 1.16946 0.97731 1.98321 1.21224 1.96369 1.82751 1.84120 0.92336 1.71077 1.08634 0.95473 0.88985 0.91983 0.91949 0.89241 0.95429 0.94931 0.96524 0.92751 0.84467 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 8.90 127.69 1.14 1.82 16 2 N -0.56 -17.29 4.66 -927.73 -4.32 -21.61 16 3 C 0.02 0.59 9.35 127.69 1.19 1.78 16 4 C 0.17 6.41 1.92 44.17 0.08 6.49 16 5 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 6 C 0.00 0.13 3.25 29.85 0.10 0.23 16 7 C -0.51 -28.32 9.13 25.60 0.23 -28.08 16 8 H 0.05 2.74 7.22 -2.91 -0.02 2.72 16 9 C 0.01 0.68 5.47 84.66 0.46 1.14 16 10 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 11 Si 0.93 43.81 27.44 68.60 1.88 45.69 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 14 H -0.24 -10.50 6.58 99.48 0.65 -9.84 16 15 C -0.13 -4.81 3.51 24.58 0.09 -4.72 16 16 C -0.15 -5.38 9.31 21.22 0.20 -5.18 16 17 C -0.11 -3.62 10.13 21.25 0.22 -3.40 16 18 C -0.18 -5.59 7.10 66.75 0.47 -5.12 16 19 Cl -0.02 -0.40 29.29 -2.72 -0.08 -0.48 16 20 S 0.18 5.84 22.57 -56.49 -1.28 4.56 16 21 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 22 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 23 H 0.06 1.86 6.52 -2.39 -0.02 1.84 16 24 H 0.06 1.64 6.56 -2.39 -0.02 1.63 16 25 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 26 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.03 1.44 5.36 -2.39 -0.01 1.43 16 28 H 0.02 0.77 7.49 -2.39 -0.02 0.75 16 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 31 H 0.16 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -61.92 284.92 1.76 -60.17 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.07 Total: 4.86 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.18 Total: -35.03 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -4.02 Total: -79.77 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.28 Total: 4.56 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -61.92 1.76 -60.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771066.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.700 kcal (2) G-P(sol) polarization free energy of solvation -61.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds