Wall clock time and date at job start Mon Mar 30 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47653 * 2 1 4 4 C 1.50704 * 109.47003 * 240.00380 * 2 1 3 5 5 C 1.33347 * 125.19237 * 106.00658 * 4 2 1 6 6 C 1.38466 * 114.93218 * 179.79574 * 5 4 2 7 7 C 1.33500 * 114.88360 * 0.49331 * 6 5 4 8 8 Cl 1.73605 * 125.20914 * 179.71564 * 7 6 5 9 9 S 1.75878 * 125.18747 * 286.30666 * 4 2 1 10 10 N 1.46902 * 109.47258 * 120.00520 * 2 1 3 11 11 C 1.46894 * 110.99844 * 301.65283 * 10 2 1 12 12 C 1.46907 * 110.99958 * 177.70227 * 10 2 1 13 13 C 1.50692 * 109.46976 * 189.99968 * 12 10 2 14 14 H 1.08004 * 120.00458 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00196 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00405 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99667 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47247 * 90.00231 * 17 15 13 19 19 H 1.48507 * 109.47371 * 210.00182 * 17 15 13 20 20 H 1.48502 * 109.47119 * 330.00392 * 17 15 13 21 21 H 1.08995 * 109.47609 * 59.99502 * 1 2 3 22 22 H 1.09005 * 109.47072 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47271 * 299.99216 * 1 2 3 24 24 H 1.08004 * 122.52925 * 359.96832 * 5 4 2 25 25 H 1.08007 * 122.55705 * 180.22656 * 6 5 4 26 26 H 1.09003 * 109.47148 * 302.65724 * 11 10 2 27 27 H 1.09001 * 109.47382 * 62.65624 * 11 10 2 28 28 H 1.09001 * 109.47069 * 182.65748 * 11 10 2 29 29 H 1.08998 * 109.47263 * 69.99520 * 12 10 2 30 30 H 1.09004 * 109.46754 * 310.00112 * 12 10 2 31 31 H 0.96998 * 119.99718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 6 2.5717 -0.1153 -2.2950 6 6 2.9658 -0.9745 -3.3068 7 6 2.7362 -2.2676 -3.0669 8 17 3.1158 -3.5695 -4.1508 9 16 1.9896 -2.4501 -1.4849 10 7 2.0196 -0.6926 1.1994 11 6 1.5166 -0.0498 2.4207 12 6 3.4871 -0.7600 1.2061 13 6 3.9427 -1.6801 2.3091 14 1 3.2149 -2.1660 2.9422 15 6 5.2886 -1.9010 2.5109 16 7 5.6862 -2.7036 3.4739 17 14 6.5474 -1.0602 1.4165 18 1 6.9263 0.2466 2.0113 19 1 7.7534 -1.9188 1.2989 20 1 5.9633 -0.8399 0.0690 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8901 24 1 2.6946 0.9556 -2.3616 25 1 3.4202 -0.6249 -4.2221 26 1 1.8157 0.9983 2.4292 27 1 0.4290 -0.1175 2.4454 28 1 1.9319 -0.5533 3.2937 29 1 3.8959 0.2367 1.3723 30 1 3.8377 -1.1411 0.2469 31 1 6.6331 -2.8593 3.6156 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:57 Heat of formation + Delta-G solvation = 33.900137 kcal Electronic energy + Delta-G solvation = -15290.907766 eV Core-core repulsion = 12725.240042 eV Total energy + Delta-G solvation = -2565.667724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.44385 -37.01302 -36.10774 -32.81417 -31.18954 -28.77655 -27.13314 -25.50854 -23.52238 -21.70847 -20.06678 -19.29446 -17.27215 -16.63395 -15.69751 -15.02444 -14.55634 -14.10749 -13.71483 -13.19207 -13.14570 -12.96493 -12.56781 -12.38106 -11.98725 -11.73431 -11.51410 -11.30042 -11.18700 -10.95743 -10.74193 -10.65178 -10.32992 -10.16249 -9.82482 -9.29625 -8.58858 -8.26930 -8.15938 -7.52625 -6.05737 -4.02677 1.07497 1.40924 2.21093 2.46685 2.81650 3.27717 3.36190 3.39952 4.42261 4.60515 4.91843 5.26697 5.40316 5.48312 5.53878 5.60803 5.83531 5.95229 6.04312 6.13019 6.14982 6.32536 6.34815 6.51810 6.65991 6.83554 6.95798 7.56578 7.80905 7.95954 8.62481 9.02219 9.56362 11.07231 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.008646 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.281759 B = 3237.773226 C = 4234.338871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.140 3.860 3 H 0.051 0.949 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.119 4.119 7 C -0.175 4.175 8 Cl -0.029 7.029 9 S 0.218 5.782 10 N -0.527 5.527 11 C 0.034 3.966 12 C 0.159 3.841 13 C -0.507 4.507 14 H 0.082 0.918 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.868 3.132 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.265 1.265 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.013 0.987 27 H 0.054 0.946 28 H 0.084 0.916 29 H -0.017 1.017 30 H 0.033 0.967 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 4.574 -12.467 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.069 0.931 4 C -0.262 4.262 5 C -0.182 4.182 6 C -0.152 4.152 7 C -0.319 4.319 8 Cl -0.001 7.001 9 S 0.482 5.518 10 N -0.251 5.251 11 C -0.114 4.114 12 C 0.033 3.967 13 C -0.545 4.545 14 H 0.100 0.900 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.695 3.305 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.190 1.190 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.000 1.000 30 H 0.051 0.949 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.215 2.636 -11.640 15.078 hybrid contribution 1.900 2.352 -1.489 3.370 sum -7.315 4.988 -13.129 15.836 Atomic orbital electron populations 1.21909 0.93618 1.02790 1.01590 1.20168 0.95132 0.94349 0.87388 0.93086 1.24656 1.04986 0.96849 0.99673 1.19829 1.03818 1.00964 0.93559 1.20004 1.03216 0.90728 1.01280 1.25466 1.13932 0.92995 0.99466 1.98331 1.93121 1.46918 1.61728 1.84749 1.57021 1.04138 1.05864 1.62135 1.12890 1.50309 0.99814 1.22308 0.98863 0.96111 0.94128 1.20269 0.82365 0.95419 0.98693 1.20976 0.92607 1.26476 1.14445 0.90030 1.24848 0.98200 0.94957 0.95022 1.69884 1.15685 1.36895 1.31327 0.86965 0.81709 0.79758 0.82080 1.20373 1.21042 1.18981 0.92466 0.91656 0.91766 0.84188 0.84162 0.96859 0.92761 0.89709 0.99974 0.94908 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.89 37.15 0.33 -1.53 16 2 C 0.14 2.30 2.51 -68.86 -0.17 2.13 16 3 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 4 C -0.14 -2.36 3.70 -36.01 -0.13 -2.49 16 5 C -0.15 -2.26 10.02 -41.21 -0.41 -2.67 16 6 C -0.12 -1.73 10.13 -41.16 -0.42 -2.14 16 7 C -0.17 -2.71 7.10 29.07 0.21 -2.51 16 8 Cl -0.03 -0.41 29.29 -51.86 -1.52 -1.93 16 9 S 0.22 3.69 22.88 -107.50 -2.46 1.23 16 10 N -0.53 -10.56 4.50 -237.73 -1.07 -11.63 16 11 C 0.03 0.61 8.94 60.06 0.54 1.15 16 12 C 0.16 3.80 3.61 -4.98 -0.02 3.78 16 13 C -0.51 -14.20 8.97 -34.44 -0.31 -14.51 16 14 H 0.08 2.47 7.39 -52.48 -0.39 2.08 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 17 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 24 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 25 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.82 6.42 -51.93 -0.33 0.49 16 28 H 0.08 1.73 6.70 -51.93 -0.35 1.38 16 29 H -0.02 -0.42 7.55 -51.93 -0.39 -0.82 16 30 H 0.03 0.81 5.46 -51.93 -0.28 0.53 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 285.10 15.07 4.30 4.30 Total: -1.00 -29.93 285.10 -8.92 -38.84 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -3.78 Total: -4.41 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -0.49 Total: -16.83 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.30 Total: -38.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.46 Total: 1.23 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.93 -8.92 -38.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.745 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds