Wall clock time and date at job start Mon Mar 30 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47653 * 2 1 4 4 C 1.50704 * 109.47003 * 240.00380 * 2 1 3 5 5 C 1.33347 * 125.19237 * 106.00658 * 4 2 1 6 6 C 1.38466 * 114.93218 * 179.79574 * 5 4 2 7 7 C 1.33500 * 114.88360 * 0.49331 * 6 5 4 8 8 Cl 1.73605 * 125.20914 * 179.71564 * 7 6 5 9 9 S 1.75878 * 125.18747 * 286.30666 * 4 2 1 10 10 N 1.46902 * 109.47258 * 120.00520 * 2 1 3 11 11 C 1.46894 * 110.99844 * 301.65283 * 10 2 1 12 12 C 1.46907 * 110.99958 * 177.70227 * 10 2 1 13 13 C 1.50692 * 109.46976 * 189.99968 * 12 10 2 14 14 H 1.08004 * 120.00458 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00196 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00405 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99667 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47247 * 90.00231 * 17 15 13 19 19 H 1.48507 * 109.47371 * 210.00182 * 17 15 13 20 20 H 1.48502 * 109.47119 * 330.00392 * 17 15 13 21 21 H 1.08995 * 109.47609 * 59.99502 * 1 2 3 22 22 H 1.09005 * 109.47072 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47271 * 299.99216 * 1 2 3 24 24 H 1.08004 * 122.52925 * 359.96832 * 5 4 2 25 25 H 1.08007 * 122.55705 * 180.22656 * 6 5 4 26 26 H 1.09003 * 109.47148 * 302.65724 * 11 10 2 27 27 H 1.09001 * 109.47382 * 62.65624 * 11 10 2 28 28 H 1.09001 * 109.47069 * 182.65748 * 11 10 2 29 29 H 1.08998 * 109.47263 * 69.99520 * 12 10 2 30 30 H 1.09004 * 109.46754 * 310.00112 * 12 10 2 31 31 H 0.96998 * 119.99718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 6 2.5717 -0.1153 -2.2950 6 6 2.9658 -0.9745 -3.3068 7 6 2.7362 -2.2676 -3.0669 8 17 3.1158 -3.5695 -4.1508 9 16 1.9896 -2.4501 -1.4849 10 7 2.0196 -0.6926 1.1994 11 6 1.5166 -0.0498 2.4207 12 6 3.4871 -0.7600 1.2061 13 6 3.9427 -1.6801 2.3091 14 1 3.2149 -2.1660 2.9422 15 6 5.2886 -1.9010 2.5109 16 7 5.6862 -2.7036 3.4739 17 14 6.5474 -1.0602 1.4165 18 1 6.9263 0.2466 2.0113 19 1 7.7534 -1.9188 1.2989 20 1 5.9633 -0.8399 0.0690 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8901 24 1 2.6946 0.9556 -2.3616 25 1 3.4202 -0.6249 -4.2221 26 1 1.8157 0.9983 2.4292 27 1 0.4290 -0.1175 2.4454 28 1 1.9319 -0.5533 3.2937 29 1 3.8959 0.2367 1.3723 30 1 3.8377 -1.1411 0.2469 31 1 6.6331 -2.8593 3.6156 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:57 Heat of formation + Delta-G solvation = 15.376182 kcal Electronic energy + Delta-G solvation = -15291.711025 eV Core-core repulsion = 12725.240042 eV Total energy + Delta-G solvation = -2566.470983 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74277 -38.28198 -37.33196 -34.84672 -32.71286 -30.26918 -28.64757 -27.02641 -24.78975 -23.40039 -21.55443 -20.45311 -19.08725 -18.21269 -16.93446 -16.60434 -16.34421 -15.55933 -15.11272 -14.63525 -14.47666 -14.30888 -14.24856 -13.69948 -13.49188 -13.19924 -12.83858 -12.70908 -12.51270 -12.43675 -12.36171 -11.98628 -11.82381 -11.66012 -11.52468 -11.40512 -10.78577 -9.46094 -9.42712 -9.07958 -8.28044 -6.29313 -0.11649 0.21490 1.01914 1.29037 1.29861 1.33428 1.43005 1.67712 2.32617 3.05094 3.20849 3.68915 4.25935 4.31993 4.38940 4.45762 4.54643 4.67749 4.86859 4.91619 4.92906 5.01131 5.04388 5.15675 5.21201 5.37469 5.39496 5.56466 5.98278 6.34121 6.62299 6.76768 7.33565 8.88466 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.008646 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.281759 B = 3237.773226 C = 4234.338871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.139 3.861 3 H 0.063 0.937 4 C -0.158 4.158 5 C -0.143 4.143 6 C -0.115 4.115 7 C -0.179 4.179 8 Cl -0.019 7.019 9 S 0.159 5.841 10 N -0.543 5.543 11 C 0.037 3.963 12 C 0.174 3.826 13 C -0.507 4.507 14 H 0.042 0.958 15 C 0.013 3.987 16 N -0.946 5.946 17 Si 0.933 3.067 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.253 1.253 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.168 0.832 25 H 0.169 0.831 26 H 0.025 0.975 27 H 0.086 0.914 28 H 0.049 0.951 29 H -0.018 1.018 30 H 0.029 0.971 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 6.696 -14.665 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.029 3.971 3 H 0.081 0.919 4 C -0.277 4.277 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.323 4.323 8 Cl 0.010 6.990 9 S 0.423 5.577 10 N -0.267 5.267 11 C -0.110 4.110 12 C 0.047 3.953 13 C -0.546 4.546 14 H 0.060 0.940 15 C -0.185 4.185 16 N -0.587 5.587 17 Si 0.757 3.243 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.177 1.177 21 H 0.099 0.901 22 H 0.074 0.926 23 H 0.094 0.906 24 H 0.186 0.814 25 H 0.186 0.814 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.068 0.932 29 H -0.001 1.001 30 H 0.047 0.953 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.385 4.770 -13.847 17.395 hybrid contribution 1.859 1.659 -0.821 2.623 sum -7.527 6.429 -14.669 17.696 Atomic orbital electron populations 1.21877 0.91161 1.02763 1.03374 1.20316 0.97043 0.94241 0.85477 0.91926 1.24747 1.06460 0.95951 1.00506 1.20202 1.02011 1.02392 0.92732 1.20363 1.02199 0.90099 1.02075 1.25528 1.14083 0.93865 0.98786 1.98333 1.92995 1.46644 1.61049 1.84925 1.58635 1.06073 1.08080 1.61999 1.10406 1.52355 1.01969 1.22271 1.00559 0.96032 0.92173 1.19925 0.85130 0.93861 0.96402 1.21226 0.92029 1.26458 1.14859 0.93990 1.25711 1.00511 0.95763 0.96491 1.70033 1.16251 1.38943 1.33474 0.85916 0.78854 0.78958 0.80556 1.19094 1.20813 1.17695 0.90071 0.92602 0.90562 0.81435 0.81369 0.95618 0.89587 0.93169 1.00086 0.95333 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.89 71.98 0.64 -2.51 16 2 C 0.14 4.22 2.51 44.17 0.11 4.33 16 3 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 4 C -0.16 -4.88 3.70 24.58 0.09 -4.78 16 5 C -0.14 -3.77 10.02 21.22 0.21 -3.55 16 6 C -0.11 -2.95 10.13 21.25 0.22 -2.73 16 7 C -0.18 -5.22 7.10 66.75 0.47 -4.75 16 8 Cl -0.02 -0.49 29.29 -2.72 -0.08 -0.57 16 9 S 0.16 5.30 22.88 -56.49 -1.29 4.00 16 10 N -0.54 -21.27 4.50 -906.05 -4.08 -25.34 16 11 C 0.04 1.32 8.94 127.69 1.14 2.46 16 12 C 0.17 8.22 3.61 85.55 0.31 8.53 16 13 C -0.51 -29.12 8.97 25.60 0.23 -28.89 16 14 H 0.04 2.68 7.39 -2.91 -0.02 2.65 16 15 C 0.01 0.74 5.47 84.65 0.46 1.20 16 16 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 17 Si 0.93 44.70 27.47 68.60 1.88 46.58 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.08 1.59 6.44 -2.38 -0.02 1.57 16 24 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 25 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 26 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 2.45 6.42 -2.39 -0.02 2.43 16 28 H 0.05 2.10 6.70 -2.39 -0.02 2.08 16 29 H -0.02 -0.87 7.55 -2.39 -0.02 -0.89 16 30 H 0.03 1.38 5.46 -2.38 -0.01 1.37 16 31 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -65.44 285.10 1.69 -63.75 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 1.07 Total: 1.34 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.89 Total: -30.69 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -3.78 Total: -84.42 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.29 Total: 4.00 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -65.44 1.69 -63.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.126 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds