Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47023 * 2 1 4 4 C 1.50699 * 109.47042 * 119.99538 * 2 1 3 5 5 C 1.33350 * 125.19174 * 255.29756 * 4 2 1 6 6 C 1.38473 * 114.93313 * 179.77047 * 5 4 2 7 7 C 1.33497 * 114.87992 * 0.49489 * 6 5 4 8 8 Cl 1.73603 * 125.20777 * 179.79208 * 7 6 5 9 9 S 1.75876 * 109.58476 * 359.53511 * 7 6 5 10 10 N 1.46897 * 109.47296 * 239.99407 * 2 1 3 11 11 C 1.46898 * 110.99690 * 55.72577 * 10 2 1 12 12 C 1.46906 * 111.00048 * 179.67380 * 10 2 1 13 13 C 1.50700 * 109.46867 * 170.00123 * 12 10 2 14 14 H 1.07990 * 120.00173 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99392 * 180.02562 * 13 12 10 16 16 N 1.31523 * 119.99504 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00563 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47368 * 89.99633 * 17 15 13 19 19 H 1.48495 * 109.47328 * 210.00010 * 17 15 13 20 20 H 1.48499 * 109.46931 * 329.99813 * 17 15 13 21 21 H 1.09004 * 109.47023 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47340 * 300.00571 * 1 2 3 23 23 H 1.08997 * 109.46756 * 60.00776 * 1 2 3 24 24 H 1.08010 * 122.53299 * 0.05314 * 5 4 2 25 25 H 1.07997 * 122.56098 * 180.31002 * 6 5 4 26 26 H 1.09002 * 109.47824 * 53.70002 * 11 10 2 27 27 H 1.09004 * 109.46955 * 173.70097 * 11 10 2 28 28 H 1.09006 * 109.47095 * 293.69448 * 11 10 2 29 29 H 1.08995 * 109.46936 * 290.00298 * 12 10 2 30 30 H 1.09007 * 109.46750 * 50.00462 * 12 10 2 31 31 H 0.97001 * 119.99597 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.5492 -0.1135 2.3052 6 6 2.9398 -0.9725 3.3186 7 6 2.7489 -2.2684 3.0613 8 17 3.1455 -3.5716 4.1374 9 16 2.0272 -2.4530 1.4680 10 7 2.0197 -0.6926 -1.1993 11 6 1.4670 -0.0881 -2.4188 12 6 3.4882 -0.7054 -1.2372 13 6 3.9543 -1.6252 -2.3362 14 1 3.2321 -2.1475 -2.9458 15 6 5.3030 -1.7997 -2.5632 16 7 5.7099 -2.6028 -3.5221 17 14 6.5524 -0.8967 -1.5083 18 1 6.8966 -1.7286 -0.3274 19 1 7.7782 -0.6375 -2.3054 20 1 5.9756 0.3939 -1.0535 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 2.6512 0.9590 2.3813 25 1 3.3690 -0.6211 4.2452 26 1 1.6704 0.9827 -2.4180 27 1 1.9304 -0.5453 -3.2931 28 1 0.3900 -0.2534 -2.4503 29 1 3.8556 0.3030 -1.4270 30 1 3.8732 -1.0583 -0.2803 31 1 6.6587 -2.7258 -3.6816 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850167.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = 33.558862 kcal Electronic energy + Delta-G solvation = -15273.891002 eV Core-core repulsion = 12708.208480 eV Total energy + Delta-G solvation = -2565.682523 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.43728 -37.02058 -36.11678 -32.81802 -31.18452 -28.77478 -27.12007 -25.53068 -23.52691 -21.69992 -20.06607 -19.29142 -17.28418 -16.62702 -15.69719 -15.00789 -14.58664 -14.10247 -13.70460 -13.19914 -13.15120 -12.95200 -12.56718 -12.41745 -11.94964 -11.76797 -11.49902 -11.31320 -11.18553 -10.94829 -10.75729 -10.49569 -10.33610 -10.25675 -9.88698 -9.30223 -8.58077 -8.27294 -8.16739 -7.51660 -6.05939 -4.02944 1.07289 1.40863 2.21402 2.46565 2.81199 3.28991 3.35928 3.38308 4.41945 4.60184 4.92809 5.26438 5.39973 5.47803 5.53843 5.60422 5.83810 5.95975 6.03552 6.12471 6.14567 6.32434 6.34563 6.51475 6.65033 6.85492 6.95098 7.55475 7.80950 7.95785 8.62219 9.02069 9.56116 11.07003 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.008495 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.407032 B = 3295.400628 C = 4267.989967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.140 3.860 3 H 0.052 0.948 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.120 4.120 7 C -0.175 4.175 8 Cl -0.029 7.029 9 S 0.220 5.780 10 N -0.527 5.527 11 C 0.034 3.966 12 C 0.159 3.841 13 C -0.507 4.507 14 H 0.082 0.918 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.868 3.132 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.268 1.268 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.013 0.987 27 H 0.085 0.915 28 H 0.054 0.946 29 H -0.012 1.012 30 H 0.027 0.973 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 4.370 12.475 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.069 0.931 4 C -0.262 4.262 5 C -0.182 4.182 6 C -0.153 4.153 7 C -0.319 4.319 8 Cl -0.001 7.001 9 S 0.484 5.516 10 N -0.252 5.252 11 C -0.114 4.114 12 C 0.033 3.967 13 C -0.545 4.545 14 H 0.100 0.900 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.695 3.305 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.193 1.193 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.031 0.969 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.005 0.995 30 H 0.045 0.955 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.216 2.431 11.633 15.039 hybrid contribution 1.810 2.377 1.505 3.346 sum -7.406 4.808 13.138 15.830 Atomic orbital electron populations 1.21912 0.93607 1.02779 1.01622 1.20166 0.95078 0.94343 0.87452 0.93057 1.24680 1.05010 0.96852 0.99654 1.19834 1.04058 1.00955 0.93381 1.20005 1.03372 0.90675 1.01230 1.25480 1.14127 0.92943 0.99379 1.98331 1.92691 1.46813 1.62269 1.84777 1.57677 1.03853 1.05274 1.62112 1.11407 1.51720 0.99968 1.22307 0.98899 0.96059 0.94152 1.20245 0.82484 0.95743 0.98208 1.20974 0.92529 1.25709 1.15307 0.90014 1.24850 0.98186 0.94967 0.95032 1.69889 1.15375 1.37198 1.31318 0.86961 0.81500 0.80983 0.81031 1.19968 1.21152 1.19292 0.91663 0.92470 0.91753 0.84183 0.84167 0.96881 0.89641 0.92755 0.99464 0.95484 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.80 37.16 0.33 -1.53 16 2 C 0.14 2.30 2.50 -68.87 -0.17 2.13 16 3 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 4 C -0.14 -2.35 3.80 -36.02 -0.14 -2.49 16 5 C -0.15 -2.25 10.03 -41.20 -0.41 -2.66 16 6 C -0.12 -1.72 10.13 -41.15 -0.42 -2.13 16 7 C -0.18 -2.71 7.10 29.07 0.21 -2.50 16 8 Cl -0.03 -0.41 29.29 -51.86 -1.52 -1.93 16 9 S 0.22 3.71 22.96 -107.50 -2.47 1.24 16 10 N -0.53 -10.56 4.47 -237.72 -1.06 -11.62 16 11 C 0.03 0.61 8.79 60.06 0.53 1.14 16 12 C 0.16 3.81 3.63 -4.97 -0.02 3.80 16 13 C -0.51 -14.19 8.92 -34.44 -0.31 -14.50 16 14 H 0.08 2.47 7.43 -52.49 -0.39 2.08 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 17 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.78 6.48 -51.93 -0.34 0.44 16 24 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 25 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 26 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 27 H 0.08 1.75 6.64 -51.93 -0.34 1.41 16 28 H 0.05 0.83 6.62 -51.93 -0.34 0.48 16 29 H -0.01 -0.30 7.18 -51.93 -0.37 -0.68 16 30 H 0.03 0.67 6.02 -51.93 -0.31 0.35 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 285.37 15.07 4.30 4.30 Total: -1.00 -29.84 285.37 -8.95 -38.79 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -3.80 Total: -4.43 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.50 Total: -16.78 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.29 Total: -38.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -2.47 Total: 1.24 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.84 -8.95 -38.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850167.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.348 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds