Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47023 * 2 1 4 4 C 1.50699 * 109.47042 * 119.99538 * 2 1 3 5 5 C 1.33350 * 125.19174 * 255.29756 * 4 2 1 6 6 C 1.38473 * 114.93313 * 179.77047 * 5 4 2 7 7 C 1.33497 * 114.87992 * 0.49489 * 6 5 4 8 8 Cl 1.73603 * 125.20777 * 179.79208 * 7 6 5 9 9 S 1.75876 * 109.58476 * 359.53511 * 7 6 5 10 10 N 1.46897 * 109.47296 * 239.99407 * 2 1 3 11 11 C 1.46898 * 110.99690 * 55.72577 * 10 2 1 12 12 C 1.46906 * 111.00048 * 179.67380 * 10 2 1 13 13 C 1.50700 * 109.46867 * 170.00123 * 12 10 2 14 14 H 1.07990 * 120.00173 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99392 * 180.02562 * 13 12 10 16 16 N 1.31523 * 119.99504 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00563 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47368 * 89.99633 * 17 15 13 19 19 H 1.48495 * 109.47328 * 210.00010 * 17 15 13 20 20 H 1.48499 * 109.46931 * 329.99813 * 17 15 13 21 21 H 1.09004 * 109.47023 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47340 * 300.00571 * 1 2 3 23 23 H 1.08997 * 109.46756 * 60.00776 * 1 2 3 24 24 H 1.08010 * 122.53299 * 0.05314 * 5 4 2 25 25 H 1.07997 * 122.56098 * 180.31002 * 6 5 4 26 26 H 1.09002 * 109.47824 * 53.70002 * 11 10 2 27 27 H 1.09004 * 109.46955 * 173.70097 * 11 10 2 28 28 H 1.09006 * 109.47095 * 293.69448 * 11 10 2 29 29 H 1.08995 * 109.46936 * 290.00298 * 12 10 2 30 30 H 1.09007 * 109.46750 * 50.00462 * 12 10 2 31 31 H 0.97001 * 119.99597 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.5492 -0.1135 2.3052 6 6 2.9398 -0.9725 3.3186 7 6 2.7489 -2.2684 3.0613 8 17 3.1455 -3.5716 4.1374 9 16 2.0272 -2.4530 1.4680 10 7 2.0197 -0.6926 -1.1993 11 6 1.4670 -0.0881 -2.4188 12 6 3.4882 -0.7054 -1.2372 13 6 3.9543 -1.6252 -2.3362 14 1 3.2321 -2.1475 -2.9458 15 6 5.3030 -1.7997 -2.5632 16 7 5.7099 -2.6028 -3.5221 17 14 6.5524 -0.8967 -1.5083 18 1 6.8966 -1.7286 -0.3274 19 1 7.7782 -0.6375 -2.3054 20 1 5.9756 0.3939 -1.0535 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 2.6512 0.9590 2.3813 25 1 3.3690 -0.6211 4.2452 26 1 1.6704 0.9827 -2.4180 27 1 1.9304 -0.5453 -3.2931 28 1 0.3900 -0.2534 -2.4503 29 1 3.8556 0.3030 -1.4270 30 1 3.8732 -1.0583 -0.2803 31 1 6.6587 -2.7258 -3.6816 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850167.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = 15.140207 kcal Electronic energy + Delta-G solvation = -15274.689695 eV Core-core repulsion = 12708.208480 eV Total energy + Delta-G solvation = -2566.481216 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73251 -38.28770 -37.33519 -34.84842 -32.70834 -30.26288 -28.63170 -27.04627 -24.79011 -23.39229 -21.55102 -20.44426 -19.09180 -18.20729 -16.92801 -16.59567 -16.35457 -15.53619 -15.12993 -14.65999 -14.43465 -14.31803 -14.27847 -13.70170 -13.41998 -13.23178 -12.82309 -12.67350 -12.57004 -12.43940 -12.24178 -12.02258 -11.85315 -11.70829 -11.51706 -11.41873 -10.77872 -9.45909 -9.42737 -9.07139 -8.28014 -6.29388 -0.11165 0.21945 1.02819 1.29445 1.31682 1.32817 1.41990 1.68165 2.32606 3.05443 3.20167 3.70172 4.25543 4.31953 4.39234 4.45502 4.55191 4.68072 4.87075 4.92203 4.92538 5.01302 5.04001 5.16274 5.20834 5.36969 5.39941 5.55604 5.98496 6.33903 6.62171 6.76774 7.33494 8.88446 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.008495 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.407032 B = 3295.400628 C = 4267.989967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.139 3.861 3 H 0.062 0.938 4 C -0.158 4.158 5 C -0.143 4.143 6 C -0.114 4.114 7 C -0.179 4.179 8 Cl -0.019 7.019 9 S 0.159 5.841 10 N -0.543 5.543 11 C 0.037 3.963 12 C 0.175 3.825 13 C -0.507 4.507 14 H 0.042 0.958 15 C 0.013 3.987 16 N -0.946 5.946 17 Si 0.933 3.067 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.251 1.251 21 H 0.055 0.945 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.168 0.832 25 H 0.169 0.831 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.084 0.916 29 H -0.016 1.016 30 H 0.025 0.975 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 6.512 14.688 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.029 3.971 3 H 0.080 0.920 4 C -0.277 4.277 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.323 4.323 8 Cl 0.009 6.991 9 S 0.423 5.577 10 N -0.268 5.268 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.546 4.546 14 H 0.060 0.940 15 C -0.185 4.185 16 N -0.587 5.587 17 Si 0.757 3.243 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.174 1.174 21 H 0.074 0.926 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.186 0.814 25 H 0.187 0.813 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.002 0.998 30 H 0.043 0.957 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.434 4.584 13.856 17.379 hybrid contribution 1.785 1.672 0.836 2.585 sum -7.650 6.256 14.692 17.706 Atomic orbital electron populations 1.21880 0.91136 1.02784 1.03388 1.20311 0.97009 0.94184 0.85572 0.92020 1.24757 1.06515 0.95916 1.00468 1.20202 1.02194 1.02383 0.92536 1.20361 1.02237 0.90015 1.02064 1.25537 1.14330 0.93815 0.98649 1.98334 1.92569 1.46572 1.61605 1.84957 1.59331 1.05816 1.07552 1.61982 1.08977 1.53711 1.02094 1.22269 1.00251 0.96336 0.92178 1.19898 0.85250 0.94013 0.96035 1.21219 0.91981 1.25625 1.15741 0.93966 1.25714 1.00458 0.95946 0.96369 1.70037 1.15934 1.39276 1.33438 0.85921 0.78854 0.80334 0.79209 1.19522 1.20597 1.17433 0.92552 0.90077 0.90587 0.81422 0.81349 0.95441 0.93131 0.89754 0.99830 0.95741 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.80 71.98 0.63 -2.51 16 2 C 0.14 4.22 2.50 44.17 0.11 4.33 16 3 H 0.06 1.77 8.11 -2.39 -0.02 1.75 16 4 C -0.16 -4.84 3.80 24.58 0.09 -4.75 16 5 C -0.14 -3.72 10.03 21.22 0.21 -3.50 16 6 C -0.11 -2.90 10.13 21.25 0.22 -2.68 16 7 C -0.18 -5.21 7.10 66.75 0.47 -4.73 16 8 Cl -0.02 -0.50 29.29 -2.72 -0.08 -0.58 16 9 S 0.16 5.30 22.96 -56.49 -1.30 4.00 16 10 N -0.54 -21.26 4.47 -906.01 -4.05 -25.32 16 11 C 0.04 1.32 8.79 127.69 1.12 2.44 16 12 C 0.18 8.27 3.63 85.56 0.31 8.58 16 13 C -0.51 -29.08 8.92 25.60 0.23 -28.85 16 14 H 0.04 2.69 7.43 -2.92 -0.02 2.67 16 15 C 0.01 0.73 5.47 84.65 0.46 1.20 16 16 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 17 Si 0.93 44.63 27.47 68.60 1.88 46.51 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.08 1.59 6.48 -2.39 -0.02 1.57 16 24 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 25 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 26 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 27 H 0.05 2.12 6.64 -2.38 -0.02 2.10 16 28 H 0.08 2.43 6.62 -2.38 -0.02 2.42 16 29 H -0.02 -0.76 7.18 -2.39 -0.02 -0.78 16 30 H 0.02 1.18 6.02 -2.38 -0.01 1.16 16 31 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -65.29 285.37 1.69 -63.61 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.07 Total: 1.27 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.86 Total: -30.47 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.75 Total: -84.33 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.30 Total: 4.00 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -65.29 1.69 -63.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850167.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.745 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds