Wall clock time and date at job start Mon Mar 30 2020 07:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38469 * 119.82136 * 2 1 4 4 C 1.37824 * 120.17922 * 179.71807 * 3 2 1 5 5 C 1.39968 * 119.81986 * 0.49493 * 4 3 2 6 6 C 1.47183 * 120.17921 * 179.78702 * 5 4 3 7 7 S 1.72011 * 127.41089 * 173.28409 * 6 5 4 8 8 N 1.69392 * 96.23766 * 180.02562 * 7 6 5 9 9 C 1.29272 * 108.41601 * 359.74672 * 8 7 6 10 10 C 1.39814 * 117.06016 * 0.45702 * 9 8 7 11 11 C 1.40827 * 123.44398 * 179.78597 * 10 9 8 12 12 H 1.08006 * 119.99844 * 138.91826 * 11 10 9 13 13 C 1.39888 * 119.99958 * 318.91205 * 11 10 9 14 14 N 1.30933 * 120.00070 * 348.76227 * 13 11 10 15 15 Si 1.86804 * 119.99811 * 168.76537 * 13 11 10 16 16 H 1.48498 * 109.46626 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.46577 * 299.99799 * 15 13 11 18 18 H 1.48497 * 109.47337 * 59.99720 * 15 13 11 19 19 C 1.39926 * 119.64214 * 359.50888 * 5 4 3 20 20 C 1.37873 * 119.81981 * 0.25497 * 19 5 4 21 21 C 1.50693 * 119.90853 * 179.97438 * 20 19 5 22 22 H 1.09001 * 109.47276 * 270.01445 * 1 2 3 23 23 H 1.08994 * 109.46958 * 30.02456 * 1 2 3 24 24 H 1.09002 * 109.47005 * 150.02106 * 1 2 3 25 25 H 1.08001 * 119.90501 * 359.97438 * 3 2 1 26 26 H 1.07999 * 120.09397 * 180.27870 * 4 3 2 27 27 H 1.07994 * 121.46409 * 180.22307 * 9 8 7 28 28 H 0.97010 * 120.00212 * 354.17247 * 14 13 11 29 29 H 1.08000 * 120.08589 * 180.27609 * 19 5 4 30 30 H 1.08999 * 109.47317 * 90.00190 * 21 20 19 31 31 H 1.09004 * 109.47351 * 209.99866 * 21 20 19 32 32 H 1.09003 * 109.47570 * 329.99909 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2013 0.0000 4 6 3.5738 1.2099 0.0059 5 6 4.2774 0.0000 0.0013 6 6 5.7493 0.0000 0.0028 7 16 6.7941 -1.3576 0.1578 8 7 8.2435 -0.4863 0.0612 9 6 7.9582 0.7659 -0.0863 10 6 6.6035 1.1097 -0.1214 11 6 6.1419 2.4317 -0.2720 12 1 5.2968 2.6390 -0.9119 13 6 6.7779 3.4762 0.4072 14 7 7.6516 3.2108 1.3455 15 14 6.3804 5.2497 -0.0245 16 1 7.1825 6.1593 0.8325 17 1 6.7086 5.4972 -1.4514 18 1 4.9346 5.5022 0.2019 19 6 3.5740 -1.2096 0.0013 20 6 2.1953 -1.2010 0.0004 21 6 1.4358 -2.5025 -0.0002 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6511 2.1341 -0.0004 26 1 4.1095 2.1477 0.0104 27 1 8.7323 1.5138 -0.1745 28 1 7.7963 2.2943 1.6285 29 1 4.1097 -2.1474 0.0023 30 1 1.2519 -2.8164 1.0273 31 1 0.4843 -2.3677 -0.5146 32 1 2.0216 -3.2649 -0.5137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259926495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:48 Heat of formation + Delta-G solvation = 32.710041 kcal Electronic energy + Delta-G solvation = -16400.689991 eV Core-core repulsion = 13837.403510 eV Total energy + Delta-G solvation = -2563.286481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.91541 -37.64808 -33.79637 -33.21842 -31.67804 -29.73129 -27.52916 -25.98059 -24.94801 -22.95971 -21.44851 -20.43815 -19.04244 -17.70224 -16.34072 -14.93189 -14.84092 -14.71921 -14.17922 -13.93906 -13.81995 -13.35329 -12.76559 -12.57328 -12.52532 -12.15489 -12.02158 -11.84346 -11.56985 -11.31071 -11.28819 -10.65549 -10.53949 -10.37161 -9.99490 -9.97731 -9.32553 -9.20966 -8.98203 -8.08951 -7.58661 -7.47120 -7.12658 -4.65674 1.35376 2.10349 2.54326 2.86080 3.00288 3.05445 3.20912 3.24993 3.67883 3.87760 4.52158 4.81825 5.25194 5.32127 5.43139 5.53491 5.73104 5.81946 5.88509 5.93590 6.05687 6.10210 6.17699 6.35819 6.41307 6.49937 6.73042 6.85042 7.03635 7.23444 7.28146 7.33192 7.49596 7.62653 7.74028 7.87451 8.17884 8.49970 9.86260 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.008149 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.978691 B = 3435.193582 C = 4881.822226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.111 4.111 4 C -0.140 4.140 5 C 0.061 3.939 6 C -0.313 4.313 7 S 0.133 5.867 8 N -0.470 5.470 9 C 0.087 3.913 10 C 0.028 3.972 11 C -0.472 4.472 12 H 0.094 0.906 13 C 0.029 3.971 14 N -0.802 5.802 15 Si 1.071 2.929 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.272 1.272 19 C -0.146 4.146 20 C -0.084 4.084 21 C -0.111 4.111 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.154 0.846 27 H 0.167 0.833 28 H 0.293 0.707 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 -2.057 -1.985 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C -0.129 4.129 4 C -0.159 4.159 5 C 0.058 3.942 6 C -0.439 4.439 7 S 0.284 5.716 8 N -0.285 5.285 9 C -0.119 4.119 10 C 0.014 3.986 11 C -0.506 4.506 12 H 0.112 0.888 13 C -0.190 4.190 14 N -0.427 5.427 15 Si 0.893 3.107 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.197 1.197 19 C -0.165 4.165 20 C -0.084 4.084 21 C -0.167 4.167 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.171 0.829 27 H 0.184 0.816 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.668 -2.602 -1.363 8.212 hybrid contribution -0.799 0.138 -0.472 0.938 sum -8.467 -2.464 -1.835 9.007 Atomic orbital electron populations 1.20718 0.92418 1.01784 1.01310 1.19558 0.95021 0.92850 1.05826 1.20869 0.94326 0.96571 1.01118 1.22105 0.93384 0.99876 1.00541 1.17685 0.88979 0.92555 0.94984 1.22982 0.95681 0.96885 1.28351 1.82807 0.95421 1.16957 1.76366 1.76023 1.20453 1.09297 1.22775 1.23196 0.97641 0.92642 0.98381 1.18245 0.89365 0.95174 0.95841 1.20193 1.15485 0.90347 1.24586 0.88845 1.27185 0.91783 1.07097 0.92982 1.70547 1.25124 1.26137 1.20853 0.83519 0.77539 0.72278 0.77348 1.19573 1.19794 1.19689 1.20975 0.93175 0.96962 1.05424 1.19392 0.93292 0.94279 1.01418 1.20784 0.99663 0.94662 1.01633 0.92214 0.92422 0.92015 0.87056 0.82921 0.81608 0.89316 0.87164 0.91854 0.91715 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.59 36.01 0.35 -1.00 16 2 C -0.13 -2.21 5.89 -104.47 -0.62 -2.83 16 3 C -0.11 -2.01 9.68 -39.65 -0.38 -2.39 16 4 C -0.14 -2.95 9.14 -39.09 -0.36 -3.31 16 5 C 0.06 1.35 5.88 -104.99 -0.62 0.74 16 6 C -0.31 -7.52 6.48 -35.06 -0.23 -7.75 16 7 S 0.13 3.00 22.82 -107.50 -2.45 0.54 16 8 N -0.47 -11.22 11.96 29.73 0.36 -10.87 16 9 C 0.09 2.09 9.11 -18.04 -0.16 1.93 16 10 C 0.03 0.69 5.03 -107.44 -0.54 0.15 16 11 C -0.47 -11.32 7.00 -37.99 -0.27 -11.59 16 12 H 0.09 2.17 6.01 -52.48 -0.32 1.86 16 13 C 0.03 0.68 5.32 -17.32 -0.09 0.59 16 14 N -0.80 -19.90 12.93 55.55 0.72 -19.18 16 15 Si 1.07 19.80 29.95 -169.99 -5.09 14.71 16 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 17 H -0.27 -4.82 7.11 56.52 0.40 -4.41 16 18 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 19 C -0.15 -2.90 9.29 -39.08 -0.36 -3.26 16 20 C -0.08 -1.45 5.87 -104.69 -0.61 -2.06 16 21 C -0.11 -1.47 9.59 36.00 0.35 -1.12 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.06 0.70 5.92 -51.93 -0.31 0.39 16 25 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.15 3.36 4.23 -52.49 -0.22 3.14 16 27 H 0.17 3.86 7.52 -52.49 -0.39 3.46 16 28 H 0.29 7.54 6.33 -40.82 -0.26 7.28 16 29 H 0.11 2.10 7.46 -52.49 -0.39 1.70 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.74 5.93 -51.93 -0.31 0.43 16 32 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 LS Contribution 280.76 15.07 4.23 4.23 Total: -1.00 -26.24 280.76 -8.89 -35.13 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.10 Total: 7.35 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -3.55 Total: -31.91 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 1.07 Total: -30.05 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.09 Total: 14.71 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.45 Total: 0.54 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.24 -8.89 -35.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.841 kcal (2) G-P(sol) polarization free energy of solvation -26.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds