Wall clock time and date at job start Mon Mar 30 2020 07:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38469 * 119.82136 * 2 1 4 4 C 1.37824 * 120.17922 * 179.71807 * 3 2 1 5 5 C 1.39968 * 119.81986 * 0.49493 * 4 3 2 6 6 C 1.47183 * 120.17921 * 179.78702 * 5 4 3 7 7 S 1.72011 * 127.41089 * 173.28409 * 6 5 4 8 8 N 1.69392 * 96.23766 * 180.02562 * 7 6 5 9 9 C 1.29272 * 108.41601 * 359.74672 * 8 7 6 10 10 C 1.39814 * 117.06016 * 0.45702 * 9 8 7 11 11 C 1.40827 * 123.44398 * 179.78597 * 10 9 8 12 12 H 1.08006 * 119.99844 * 138.91826 * 11 10 9 13 13 C 1.39888 * 119.99958 * 318.91205 * 11 10 9 14 14 N 1.30933 * 120.00070 * 348.76227 * 13 11 10 15 15 Si 1.86804 * 119.99811 * 168.76537 * 13 11 10 16 16 H 1.48498 * 109.46626 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.46577 * 299.99799 * 15 13 11 18 18 H 1.48497 * 109.47337 * 59.99720 * 15 13 11 19 19 C 1.39926 * 119.64214 * 359.50888 * 5 4 3 20 20 C 1.37873 * 119.81981 * 0.25497 * 19 5 4 21 21 C 1.50693 * 119.90853 * 179.97438 * 20 19 5 22 22 H 1.09001 * 109.47276 * 270.01445 * 1 2 3 23 23 H 1.08994 * 109.46958 * 30.02456 * 1 2 3 24 24 H 1.09002 * 109.47005 * 150.02106 * 1 2 3 25 25 H 1.08001 * 119.90501 * 359.97438 * 3 2 1 26 26 H 1.07999 * 120.09397 * 180.27870 * 4 3 2 27 27 H 1.07994 * 121.46409 * 180.22307 * 9 8 7 28 28 H 0.97010 * 120.00212 * 354.17247 * 14 13 11 29 29 H 1.08000 * 120.08589 * 180.27609 * 19 5 4 30 30 H 1.08999 * 109.47317 * 90.00190 * 21 20 19 31 31 H 1.09004 * 109.47351 * 209.99866 * 21 20 19 32 32 H 1.09003 * 109.47570 * 329.99909 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2013 0.0000 4 6 3.5738 1.2099 0.0059 5 6 4.2774 0.0000 0.0013 6 6 5.7493 0.0000 0.0028 7 16 6.7941 -1.3576 0.1578 8 7 8.2435 -0.4863 0.0612 9 6 7.9582 0.7659 -0.0863 10 6 6.6035 1.1097 -0.1214 11 6 6.1419 2.4317 -0.2720 12 1 5.2968 2.6390 -0.9119 13 6 6.7779 3.4762 0.4072 14 7 7.6516 3.2108 1.3455 15 14 6.3804 5.2497 -0.0245 16 1 7.1825 6.1593 0.8325 17 1 6.7086 5.4972 -1.4514 18 1 4.9346 5.5022 0.2019 19 6 3.5740 -1.2096 0.0013 20 6 2.1953 -1.2010 0.0004 21 6 1.4358 -2.5025 -0.0002 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6511 2.1341 -0.0004 26 1 4.1095 2.1477 0.0104 27 1 8.7323 1.5138 -0.1745 28 1 7.7963 2.2943 1.6285 29 1 4.1097 -2.1474 0.0023 30 1 1.2519 -2.8164 1.0273 31 1 0.4843 -2.3677 -0.5146 32 1 2.0216 -3.2649 -0.5137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259926495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:48 Heat of formation + Delta-G solvation = 20.552682 kcal Electronic energy + Delta-G solvation = -16401.217173 eV Core-core repulsion = 13837.403510 eV Total energy + Delta-G solvation = -2563.813663 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42867 -39.39730 -35.54775 -34.71349 -33.04093 -31.37839 -28.94249 -27.39031 -26.56295 -24.68732 -22.90325 -22.05782 -20.71469 -19.42640 -18.11019 -16.54670 -16.24567 -16.23017 -15.67290 -15.59660 -15.13522 -14.94736 -14.40314 -14.19435 -13.60327 -13.51774 -13.47837 -13.34071 -12.83807 -12.73498 -12.58135 -12.25178 -12.00261 -11.87284 -11.68612 -11.52548 -11.03164 -10.99870 -10.63783 -9.56429 -9.42083 -9.23691 -8.79123 -6.49871 -0.37977 0.61764 0.89864 1.02574 1.31944 1.46304 1.55836 1.81850 1.96241 2.34735 2.91098 3.11403 3.87298 4.05347 4.11172 4.29461 4.38749 4.49415 4.59994 4.66339 4.77782 4.86141 4.94743 4.98846 5.05578 5.12414 5.17131 5.37462 5.47327 5.52725 5.68379 5.79355 5.84802 5.85841 6.05213 6.30640 6.37232 6.73510 8.03385 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.008149 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.978691 B = 3435.193582 C = 4881.822226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.119 4.119 3 C -0.116 4.116 4 C -0.156 4.156 5 C 0.018 3.982 6 C -0.316 4.316 7 S 0.166 5.834 8 N -0.489 5.489 9 C 0.081 3.919 10 C -0.002 4.002 11 C -0.493 4.493 12 H 0.093 0.907 13 C 0.000 4.000 14 N -0.831 5.831 15 Si 1.117 2.883 16 H -0.275 1.275 17 H -0.258 1.258 18 H -0.255 1.255 19 C -0.153 4.153 20 C -0.087 4.087 21 C -0.109 4.109 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.166 0.834 28 H 0.276 0.724 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 -2.522 -2.409 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.120 4.120 3 C -0.134 4.134 4 C -0.176 4.176 5 C 0.015 3.985 6 C -0.443 4.443 7 S 0.318 5.682 8 N -0.306 5.306 9 C -0.123 4.123 10 C -0.016 4.016 11 C -0.527 4.527 12 H 0.111 0.889 13 C -0.213 4.213 14 N -0.456 5.456 15 Si 0.934 3.066 16 H -0.199 1.199 17 H -0.183 1.183 18 H -0.179 1.179 19 C -0.172 4.172 20 C -0.087 4.087 21 C -0.165 4.165 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.183 0.817 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.053 -3.093 -1.795 11.617 hybrid contribution 0.007 0.051 -0.346 0.350 sum -11.045 -3.042 -2.142 11.655 Atomic orbital electron populations 1.20824 0.88789 1.03649 1.02878 1.20139 0.97605 0.91915 1.02299 1.21196 0.93172 0.98622 1.00424 1.22110 0.94942 0.98944 1.01599 1.17912 0.88256 0.94178 0.98129 1.23568 0.97217 0.97285 1.26267 1.82506 0.94400 1.15985 1.75321 1.75926 1.21483 1.09369 1.23795 1.23168 0.97689 0.92678 0.98747 1.18537 0.89760 0.96121 0.97187 1.20254 1.16284 0.90539 1.25671 0.88896 1.28472 0.90630 1.10407 0.91811 1.70667 1.27352 1.24811 1.22797 0.82979 0.78126 0.67814 0.77703 1.19938 1.18285 1.17942 1.21148 0.94650 0.96051 1.05328 1.19904 0.92491 0.96646 0.99708 1.20868 1.00241 0.92381 1.03044 0.90573 0.90924 0.89941 0.84469 0.84534 0.81738 0.91196 0.86993 0.90369 0.89203 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.59 71.24 0.68 -1.42 16 2 C -0.12 -3.55 5.89 -19.76 -0.12 -3.67 16 3 C -0.12 -3.96 9.68 22.23 0.22 -3.75 16 4 C -0.16 -6.62 9.14 22.59 0.21 -6.41 16 5 C 0.02 0.80 5.88 -20.10 -0.12 0.68 16 6 C -0.32 -15.63 6.48 25.20 0.16 -15.47 16 7 S 0.17 7.57 22.82 -56.49 -1.29 6.29 16 8 N -0.49 -24.09 11.96 -59.85 -0.72 -24.81 16 9 C 0.08 4.10 9.11 85.45 0.78 4.88 16 10 C 0.00 -0.11 5.03 -21.69 -0.11 -0.22 16 11 C -0.49 -24.61 7.00 23.30 0.16 -24.45 16 12 H 0.09 4.50 6.01 -2.91 -0.02 4.48 16 13 C 0.00 0.01 5.32 85.23 0.45 0.46 16 14 N -0.83 -43.04 12.93 21.82 0.28 -42.76 16 15 Si 1.12 40.21 29.95 68.60 2.05 42.27 16 16 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 18 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 19 C -0.15 -5.88 9.29 22.59 0.21 -5.67 16 20 C -0.09 -2.75 5.87 -19.91 -0.12 -2.87 16 21 C -0.11 -2.41 9.59 71.23 0.68 -1.73 16 22 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 24 H 0.08 1.35 5.92 -2.39 -0.01 1.34 16 25 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 26 H 0.14 6.19 4.23 -2.91 -0.01 6.18 16 27 H 0.17 8.15 7.52 -2.91 -0.02 8.13 16 28 H 0.28 15.03 6.33 -92.70 -0.59 14.44 16 29 H 0.11 4.16 7.46 -2.91 -0.02 4.14 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.55 5.93 -2.38 -0.01 1.54 16 32 H 0.06 1.40 8.08 -2.39 -0.02 1.38 16 Total: -1.00 -58.65 280.76 4.76 -53.89 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 1.33 Total: 24.76 kcal Atomic # 6 Polarization: -62.73 SS G_CDS: 3.10 Total: -59.63 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.43 Total: -67.56 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.05 Total: 42.27 kcal Atomic # 16 Polarization: 7.57 SS G_CDS: -1.29 Total: 6.29 kcal Total: -58.65 4.76 -53.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.443 kcal (2) G-P(sol) polarization free energy of solvation -58.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds