Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48495 * 109.47051 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46633 * 120.00194 * 3 2 1 6 6 H 1.48500 * 109.47113 * 240.00129 * 3 2 1 7 7 C 1.37876 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99694 * 175.97114 * 7 2 1 9 9 C 1.50696 * 120.00209 * 355.96372 * 7 2 1 10 10 H 1.08993 * 109.47385 * 325.24531 * 9 7 2 11 11 C 1.53007 * 109.47056 * 85.24335 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.37656 * 11 9 7 13 13 C 1.50696 * 109.47386 * 205.24144 * 9 7 2 14 14 C 1.38272 * 119.95474 * 299.72841 * 13 9 7 15 15 C 1.38212 * 120.06695 * 179.72346 * 14 13 9 16 16 Cl 1.73599 * 120.01395 * 180.25418 * 15 14 13 17 17 C 1.38868 * 119.97226 * 0.52810 * 15 14 13 18 18 O 1.35930 * 120.04257 * 179.76901 * 17 15 14 19 19 C 1.38630 * 119.90748 * 359.74964 * 17 15 14 20 20 C 1.38400 * 119.93611 * 359.97438 * 19 17 15 21 21 F 1.35099 * 119.99198 * 180.02562 * 20 19 17 22 22 H 0.97000 * 119.99968 * 174.44401 * 1 2 3 23 23 H 1.09006 * 109.46829 * 305.37859 * 11 9 7 24 24 H 1.08999 * 109.46972 * 65.37609 * 11 9 7 25 25 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 26 26 H 1.00897 * 111.00178 * 303.95619 * 12 11 9 27 27 H 1.08000 * 119.96394 * 359.97438 * 14 13 9 28 28 H 0.96699 * 113.99670 * 269.97610 * 18 17 15 29 29 H 1.08004 * 120.03108 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0825 -1.1952 -0.0663 9 6 1.2538 -2.4976 0.0907 10 1 0.3783 -2.3689 0.7270 11 6 0.8087 -2.9288 -1.3082 12 7 -0.0317 -4.1293 -1.2064 13 6 2.1520 -3.5544 0.6800 14 6 3.3290 -3.8956 0.0396 15 6 4.1574 -4.8605 0.5810 16 17 5.6380 -5.2832 -0.2208 17 6 3.8020 -5.4958 1.7636 18 8 4.6133 -6.4483 2.2948 19 6 2.6189 -5.1569 2.4017 20 6 1.7951 -4.1861 1.8593 21 9 0.6421 -3.8546 2.4805 22 1 -0.4850 -0.8361 -0.0813 23 1 0.2381 -2.1241 -1.7720 24 1 1.6857 -3.1497 -1.9165 25 1 -0.3384 -4.4344 -2.1179 26 1 0.4528 -4.8697 -0.7216 27 1 3.6033 -3.4048 -0.8825 28 1 4.4213 -7.3447 1.9871 29 1 2.3408 -5.6494 3.3218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = -83.591704 kcal Electronic energy + Delta-G solvation = -17325.930042 eV Core-core repulsion = 14188.954314 eV Total energy + Delta-G solvation = -3136.975729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.44117 -39.59042 -37.18301 -36.33832 -34.89223 -32.50995 -30.61227 -29.91617 -26.93731 -23.88374 -23.19171 -22.20578 -20.11050 -18.61530 -17.24553 -16.70538 -16.25889 -15.72255 -15.29606 -14.82766 -14.48412 -14.06196 -13.79678 -13.50945 -13.47117 -12.80925 -12.68122 -12.23988 -11.62611 -11.57503 -11.19909 -10.92176 -10.83187 -10.63336 -10.44260 -10.17864 -9.87811 -8.94552 -8.58904 -8.52926 -8.07670 -7.90823 -6.46509 -4.23354 1.21319 1.32976 2.26254 3.38899 3.41437 3.59648 3.62988 4.03069 4.45008 4.75885 4.90725 5.17350 5.28153 5.42991 5.48948 5.76912 5.90977 6.10641 6.29357 6.37908 6.41400 6.54736 6.93820 7.08969 7.32660 7.56673 7.70447 7.96454 8.05583 8.29958 8.72717 9.49373 10.91275 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.007474 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.780005 B = 3745.324493 C = 4169.248986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 1.066 2.934 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.597 4.597 8 H 0.054 0.946 9 C 0.064 3.936 10 H 0.060 0.940 11 C 0.070 3.930 12 N -0.853 5.853 13 C -0.055 4.055 14 C -0.070 4.070 15 C -0.071 4.071 16 Cl -0.068 7.068 17 C 0.113 3.887 18 O -0.485 6.485 19 C -0.172 4.172 20 C 0.113 3.887 21 F -0.128 7.128 22 H 0.277 0.723 23 H 0.073 0.927 24 H 0.013 0.987 25 H 0.326 0.674 26 H 0.326 0.674 27 H 0.144 0.856 28 H 0.387 0.613 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -11.908 0.008 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.179 4.179 3 Si 0.893 3.107 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.635 4.635 8 H 0.073 0.927 9 C 0.044 3.956 10 H 0.078 0.922 11 C -0.060 4.060 12 N -0.381 5.381 13 C -0.056 4.056 14 C -0.089 4.089 15 C -0.098 4.098 16 Cl -0.040 7.040 17 C 0.067 3.933 18 O -0.294 6.294 19 C -0.192 4.192 20 C 0.093 3.907 21 F -0.106 7.106 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.031 0.969 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.161 0.839 28 H 0.242 0.758 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.798 -9.329 0.753 11.010 hybrid contribution 0.809 -2.542 -0.781 2.780 sum 6.608 -11.872 -0.028 13.587 Atomic orbital electron populations 1.70751 1.06847 1.31624 1.44175 1.25844 0.96427 1.02531 0.93111 0.83590 0.75000 0.75360 0.76718 1.20637 1.21298 1.21278 1.21817 0.94348 0.90414 1.56942 0.92745 1.18109 0.94325 0.90811 0.92309 0.92194 1.22240 0.93519 0.91038 0.99234 1.58934 1.46409 1.09011 1.23749 1.20632 0.96176 0.95746 0.93082 1.20772 0.92345 0.94921 1.00832 1.21359 0.90898 1.02404 0.95158 1.98336 1.33781 1.92705 1.79142 1.17585 0.90246 0.94043 0.91381 1.84870 1.56636 1.18458 1.69465 1.21163 0.94288 1.01208 1.02513 1.17443 0.83720 0.96562 0.92952 1.91509 1.46223 1.91344 1.81524 0.91184 0.90868 0.96914 0.86325 0.86300 0.83854 0.75783 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.57 55.43 0.75 -25.32 15 2 C 0.03 0.74 5.45 -17.82 -0.10 0.65 15 3 Si 1.07 24.29 29.91 -169.99 -5.08 19.20 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.60 -15.66 8.11 -34.44 -0.28 -15.94 15 8 H 0.05 1.42 7.43 -52.49 -0.39 1.03 15 9 C 0.06 1.49 1.75 -92.92 -0.16 1.33 15 10 H 0.06 1.60 6.01 -51.93 -0.31 1.28 15 11 C 0.07 1.48 5.97 -3.82 -0.02 1.46 15 12 N -0.85 -15.41 9.62 -10.37 -0.10 -15.51 15 13 C -0.05 -1.11 3.83 -104.53 -0.40 -1.51 15 14 C -0.07 -1.27 8.28 -39.58 -0.33 -1.60 15 15 C -0.07 -1.14 6.33 -39.36 -0.25 -1.39 15 16 Cl -0.07 -0.98 28.50 -51.86 -1.48 -2.46 15 17 C 0.11 1.71 6.70 -39.20 -0.26 1.44 15 18 O -0.48 -6.13 12.96 -19.52 -0.25 -6.38 15 19 C -0.17 -2.71 9.96 -39.38 -0.39 -3.11 15 20 C 0.11 2.14 7.24 -39.44 -0.29 1.86 15 21 F -0.13 -2.62 16.18 2.25 0.04 -2.58 15 22 H 0.28 8.04 6.31 -40.82 -0.26 7.78 15 23 H 0.07 1.72 7.68 -51.93 -0.40 1.33 15 24 H 0.01 0.26 7.19 -51.93 -0.37 -0.12 15 25 H 0.33 5.00 9.08 -39.29 -0.36 4.65 15 26 H 0.33 5.53 8.09 -39.29 -0.32 5.21 15 27 H 0.14 2.62 7.52 -52.49 -0.39 2.23 15 28 H 0.39 2.96 9.06 45.56 0.41 3.37 15 29 H 0.14 1.90 8.06 -52.48 -0.42 1.47 15 LS Contribution 272.14 15.07 4.10 4.10 Total: -1.00 -29.23 272.14 -6.11 -35.34 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -1.61 Total: 10.41 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.48 Total: -16.81 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.65 Total: -40.83 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.25 Total: -6.38 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.08 Total: 19.20 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.48 Total: -2.46 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.23 -6.11 -35.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.253 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds