Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48495 * 109.47051 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46633 * 120.00194 * 3 2 1 6 6 H 1.48500 * 109.47113 * 240.00129 * 3 2 1 7 7 C 1.37876 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99694 * 175.97114 * 7 2 1 9 9 C 1.50696 * 120.00209 * 355.96372 * 7 2 1 10 10 H 1.08993 * 109.47385 * 325.24531 * 9 7 2 11 11 C 1.53007 * 109.47056 * 85.24335 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.37656 * 11 9 7 13 13 C 1.50696 * 109.47386 * 205.24144 * 9 7 2 14 14 C 1.38272 * 119.95474 * 299.72841 * 13 9 7 15 15 C 1.38212 * 120.06695 * 179.72346 * 14 13 9 16 16 Cl 1.73599 * 120.01395 * 180.25418 * 15 14 13 17 17 C 1.38868 * 119.97226 * 0.52810 * 15 14 13 18 18 O 1.35930 * 120.04257 * 179.76901 * 17 15 14 19 19 C 1.38630 * 119.90748 * 359.74964 * 17 15 14 20 20 C 1.38400 * 119.93611 * 359.97438 * 19 17 15 21 21 F 1.35099 * 119.99198 * 180.02562 * 20 19 17 22 22 H 0.97000 * 119.99968 * 174.44401 * 1 2 3 23 23 H 1.09006 * 109.46829 * 305.37859 * 11 9 7 24 24 H 1.08999 * 109.46972 * 65.37609 * 11 9 7 25 25 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 26 26 H 1.00897 * 111.00178 * 303.95619 * 12 11 9 27 27 H 1.08000 * 119.96394 * 359.97438 * 14 13 9 28 28 H 0.96699 * 113.99670 * 269.97610 * 18 17 15 29 29 H 1.08004 * 120.03108 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0825 -1.1952 -0.0663 9 6 1.2538 -2.4976 0.0907 10 1 0.3783 -2.3689 0.7270 11 6 0.8087 -2.9288 -1.3082 12 7 -0.0317 -4.1293 -1.2064 13 6 2.1520 -3.5544 0.6800 14 6 3.3290 -3.8956 0.0396 15 6 4.1574 -4.8605 0.5810 16 17 5.6380 -5.2832 -0.2208 17 6 3.8020 -5.4958 1.7636 18 8 4.6133 -6.4483 2.2948 19 6 2.6189 -5.1569 2.4017 20 6 1.7951 -4.1861 1.8593 21 9 0.6421 -3.8546 2.4805 22 1 -0.4850 -0.8361 -0.0813 23 1 0.2381 -2.1241 -1.7720 24 1 1.6857 -3.1497 -1.9165 25 1 -0.3384 -4.4344 -2.1179 26 1 0.4528 -4.8697 -0.7216 27 1 3.6033 -3.4048 -0.8825 28 1 4.4213 -7.3447 1.9871 29 1 2.3408 -5.6494 3.3218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = -104.974489 kcal Electronic energy + Delta-G solvation = -17326.857269 eV Core-core repulsion = 14188.954314 eV Total energy + Delta-G solvation = -3137.902956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.95628 -40.89899 -38.56072 -37.54951 -36.42848 -34.38080 -32.07867 -31.33727 -28.57108 -25.83913 -24.60197 -23.61390 -21.77676 -19.82781 -19.09733 -18.15865 -17.57647 -17.12878 -16.84363 -16.40664 -15.86357 -15.68494 -15.49014 -14.95595 -14.90179 -14.35191 -14.13331 -13.81400 -13.41594 -13.09432 -12.69310 -12.41366 -12.32973 -12.05337 -11.96222 -11.83528 -11.55157 -10.80422 -10.57277 -9.95023 -9.60736 -9.36731 -8.59618 -6.36044 -0.14617 0.01091 1.00906 1.54611 1.61013 1.80204 2.27085 2.57881 2.82974 3.17961 3.41970 3.63027 3.77887 3.87922 4.12520 4.42489 4.48506 4.63688 4.65556 4.87115 4.94106 5.02782 5.29068 5.49137 5.62725 5.92922 6.19934 6.28400 6.55922 6.67455 6.68796 7.44370 8.77566 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.007474 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.780005 B = 3745.324493 C = 4169.248986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.023 4.023 3 Si 1.108 2.892 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.601 4.601 8 H 0.053 0.947 9 C 0.065 3.935 10 H 0.020 0.980 11 C 0.086 3.914 12 N -0.853 5.853 13 C -0.080 4.080 14 C -0.071 4.071 15 C -0.071 4.071 16 Cl -0.048 7.048 17 C 0.138 3.862 18 O -0.483 6.483 19 C -0.159 4.159 20 C 0.094 3.906 21 F -0.144 7.144 22 H 0.262 0.738 23 H 0.041 0.959 24 H 0.023 0.977 25 H 0.344 0.656 26 H 0.336 0.664 27 H 0.137 0.863 28 H 0.414 0.586 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 -13.639 0.326 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.223 4.223 3 Si 0.930 3.070 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.639 4.639 8 H 0.071 0.929 9 C 0.046 3.954 10 H 0.038 0.962 11 C -0.045 4.045 12 N -0.383 5.383 13 C -0.081 4.081 14 C -0.090 4.090 15 C -0.098 4.098 16 Cl -0.019 7.019 17 C 0.091 3.909 18 O -0.296 6.296 19 C -0.178 4.178 20 C 0.075 3.925 21 F -0.123 7.123 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.157 0.843 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.275 0.725 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.919 -11.121 1.054 13.693 hybrid contribution 0.267 -2.204 -0.855 2.379 sum 8.187 -13.325 0.199 15.640 Atomic orbital electron populations 1.70862 1.07895 1.30783 1.47234 1.27135 0.96468 1.06063 0.92640 0.83044 0.74226 0.71797 0.77886 1.21209 1.20142 1.19127 1.22161 0.94429 0.91872 1.55468 0.92889 1.17865 0.93334 0.91349 0.92840 0.96215 1.21817 0.93658 0.91332 0.97687 1.58748 1.45890 1.08475 1.25193 1.20298 0.96878 0.96559 0.94413 1.20625 0.92070 0.95603 1.00672 1.21376 0.91281 1.01673 0.95506 1.98347 1.32302 1.92401 1.78849 1.17525 0.89462 0.93751 0.90134 1.84816 1.55831 1.19734 1.69240 1.21352 0.93620 0.99739 1.03084 1.17671 0.84006 0.97855 0.93008 1.91465 1.47321 1.91720 1.81771 0.92707 0.94031 0.95871 0.84305 0.85155 0.84475 0.72546 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.57 21.45 0.29 -55.87 15 2 C -0.02 -1.30 5.45 84.65 0.46 -0.84 15 3 Si 1.11 49.36 29.91 68.60 2.05 51.41 15 4 H -0.29 -12.92 7.11 99.48 0.71 -12.21 15 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 6 H -0.27 -10.88 7.11 99.48 0.71 -10.18 15 7 C -0.60 -32.25 8.11 25.60 0.21 -32.04 15 8 H 0.05 2.79 7.43 -2.91 -0.02 2.77 15 9 C 0.07 3.16 1.75 -12.29 -0.02 3.14 15 10 H 0.02 1.11 6.01 -2.39 -0.01 1.09 15 11 C 0.09 3.73 5.97 86.31 0.52 4.24 15 12 N -0.85 -30.87 9.62 -186.72 -1.80 -32.67 15 13 C -0.08 -3.23 3.83 -19.80 -0.08 -3.31 15 14 C -0.07 -2.49 8.28 22.27 0.18 -2.30 15 15 C -0.07 -2.09 6.33 22.41 0.14 -1.95 15 16 Cl -0.05 -1.22 28.50 -2.72 -0.08 -1.30 15 17 C 0.14 3.66 6.70 22.51 0.15 3.81 15 18 O -0.48 -9.92 12.96 -92.76 -1.20 -11.12 15 19 C -0.16 -4.56 9.96 22.40 0.22 -4.34 15 20 C 0.09 3.51 7.24 22.36 0.16 3.67 15 21 F -0.14 -6.01 16.18 44.97 0.73 -5.28 15 22 H 0.26 16.14 6.31 -92.71 -0.58 15.56 15 23 H 0.04 2.04 7.68 -2.38 -0.02 2.02 15 24 H 0.02 0.94 7.19 -2.39 -0.02 0.92 15 25 H 0.34 10.34 9.08 -89.70 -0.81 9.53 15 26 H 0.34 11.21 8.09 -89.70 -0.73 10.48 15 27 H 0.14 4.92 7.52 -2.91 -0.02 4.90 15 28 H 0.41 4.16 9.06 -74.06 -0.67 3.49 15 29 H 0.17 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -64.64 272.14 1.15 -63.49 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.79 Total: 21.26 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 1.95 Total: -29.91 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -1.51 Total: -88.54 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.20 Total: -11.12 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.73 Total: -5.28 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.41 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -64.64 1.15 -63.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.488 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds