Wall clock time and date at job start Mon Mar 30 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35916 * 117.00002 * 2 1 4 4 C 1.38748 * 120.03284 * 0.02562 * 3 2 1 5 5 C 1.38145 * 120.00408 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.06822 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.97062 * 180.02562 * 6 5 4 8 8 C 1.38565 * 120.06232 * 359.74519 * 6 5 4 9 9 F 1.35104 * 120.00595 * 180.27805 * 8 6 5 10 10 C 1.38369 * 119.99502 * 0.50624 * 8 6 5 11 11 C 1.50703 * 120.03685 * 179.76710 * 10 8 6 12 12 H 1.08994 * 109.47275 * 164.72947 * 11 10 8 13 13 N 1.46898 * 109.46797 * 44.72463 * 11 10 8 14 14 C 1.50700 * 109.47148 * 284.72724 * 11 10 8 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46793 * 300.00001 * 18 16 14 21 21 H 1.48500 * 109.47000 * 60.00094 * 18 16 14 22 22 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46956 * 300.00094 * 1 2 3 24 24 H 1.09002 * 109.46832 * 59.99733 * 1 2 3 25 25 H 1.07995 * 119.99714 * 359.95697 * 4 3 2 26 26 H 1.07999 * 119.96561 * 180.02562 * 5 4 3 27 27 H 1.00892 * 111.00332 * 300.00256 * 13 11 10 28 28 H 1.00905 * 110.99665 * 63.96030 * 13 11 10 29 29 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2911 2.3751 0.0005 5 6 1.9189 3.6057 0.0011 6 6 3.3003 3.6790 0.0005 7 17 4.0865 5.2267 0.0019 8 6 4.0570 2.5183 0.0048 9 9 5.4061 2.5912 0.0099 10 6 3.4309 1.2843 -0.0010 11 6 4.2531 0.0213 -0.0017 12 1 3.6195 -0.8248 0.2643 13 7 5.3414 0.1450 0.9772 14 6 4.8348 -0.1987 -1.3744 15 1 4.6300 0.5058 -2.1669 16 6 5.6292 -1.2988 -1.6182 17 7 5.8790 -2.1565 -0.6530 18 14 6.3509 -1.5712 -3.3196 19 1 7.1619 -2.8151 -3.3199 20 1 5.2510 -1.6965 -4.3094 21 1 7.2138 -0.4182 -3.6816 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2126 2.3191 0.0003 26 1 1.3306 4.5114 0.0019 27 1 5.9432 0.9229 0.7525 28 1 4.9769 0.2287 1.9144 29 1 5.5046 -2.0149 0.2306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259990865.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:26 Heat of formation + Delta-G solvation = -83.699717 kcal Electronic energy + Delta-G solvation = -17570.360962 eV Core-core repulsion = 14433.380549 eV Total energy + Delta-G solvation = -3136.980412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.10929 -41.28503 -38.61667 -37.57181 -36.60037 -33.54278 -31.32049 -30.79401 -28.18313 -27.58912 -24.81167 -23.34063 -22.46956 -19.53756 -19.03638 -18.24489 -17.26034 -17.19591 -17.02462 -16.47307 -16.21462 -15.66273 -15.62420 -15.33563 -14.42766 -14.16233 -13.91346 -13.89065 -13.39401 -13.16105 -12.83494 -12.65537 -12.43774 -12.26297 -11.94333 -11.79075 -11.63205 -10.90115 -10.48171 -9.82007 -9.40953 -9.15470 -8.40124 -6.24712 -0.06746 0.06476 0.97143 1.52941 1.61656 1.80593 2.20258 2.37721 2.63520 3.15300 3.30855 3.62049 3.82974 4.10315 4.14794 4.26773 4.35318 4.40551 4.55455 4.70330 4.85640 4.91119 5.04353 5.28136 5.48488 5.88506 6.16544 6.34222 6.64807 6.75566 6.98733 7.65573 8.96655 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.008766 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.530671 B = 3193.418940 C = 4111.789477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.331 6.331 3 C 0.149 3.851 4 C -0.193 4.193 5 C -0.046 4.046 6 C -0.117 4.117 7 Cl -0.053 7.053 8 C 0.124 3.876 9 F -0.130 7.130 10 C -0.169 4.169 11 C 0.255 3.745 12 H 0.022 0.978 13 N -0.844 5.844 14 C -0.614 4.614 15 H 0.029 0.971 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 1.108 2.892 19 H -0.281 1.281 20 H -0.272 1.272 21 H -0.279 1.279 22 H 0.112 0.888 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.182 0.818 26 H 0.183 0.817 27 H 0.334 0.666 28 H 0.313 0.687 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 11.959 2.077 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.244 6.244 3 C 0.102 3.898 4 C -0.212 4.212 5 C -0.064 4.064 6 C -0.145 4.145 7 Cl -0.024 7.024 8 C 0.103 3.897 9 F -0.109 7.109 10 C -0.173 4.173 11 C 0.146 3.854 12 H 0.040 0.960 13 N -0.376 5.376 14 C -0.652 4.652 15 H 0.048 0.952 16 C -0.213 4.213 17 N -0.551 5.551 18 Si 0.931 3.069 19 H -0.207 1.207 20 H -0.198 1.198 21 H -0.205 1.205 22 H 0.131 0.869 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.200 0.800 26 H 0.200 0.800 27 H 0.151 0.849 28 H 0.124 0.876 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.778 10.141 0.971 15.573 hybrid contribution -0.881 1.980 1.234 2.494 sum -12.659 12.122 2.205 17.664 Atomic orbital electron populations 1.23488 0.75744 1.05772 1.03051 1.86211 1.24072 1.26383 1.87710 1.18796 0.90545 0.85972 0.94518 1.21582 1.02113 0.89837 1.07636 1.21030 0.90152 0.99677 0.95583 1.20945 0.94277 0.85269 1.14005 1.98341 1.80972 1.25774 1.97290 1.17117 0.76962 0.92462 1.03139 1.91348 1.29393 1.96510 1.93634 1.20666 0.93995 0.96637 1.05970 1.17781 0.87299 0.88150 0.92175 0.96015 1.59300 1.22544 1.51820 1.03945 1.21901 1.36431 1.12044 0.94849 0.95213 1.26962 0.94747 0.92339 1.07278 1.70659 1.42782 1.37140 1.04547 0.83079 0.76337 0.76340 0.71182 1.20676 1.19787 1.20464 0.86943 0.90266 0.90806 0.80038 0.80006 0.84890 0.87563 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 15 2 O -0.33 -11.72 9.33 -92.61 -0.86 -12.59 15 3 C 0.15 5.33 6.66 22.50 0.15 5.48 15 4 C -0.19 -4.84 9.04 22.37 0.20 -4.64 15 5 C -0.05 -1.12 9.82 22.27 0.22 -0.90 15 6 C -0.12 -3.74 6.33 22.37 0.14 -3.60 15 7 Cl -0.05 -1.49 28.61 -2.72 -0.08 -1.56 15 8 C 0.12 5.02 6.99 22.38 0.16 5.18 15 9 F -0.13 -5.79 13.88 44.97 0.62 -5.17 15 10 C -0.17 -7.39 4.89 -19.73 -0.10 -7.48 15 11 C 0.26 13.52 2.28 43.42 0.10 13.62 15 12 H 0.02 1.28 7.01 -2.39 -0.02 1.26 15 13 N -0.84 -42.80 7.67 -174.96 -1.34 -44.14 15 14 C -0.61 -36.33 8.65 25.60 0.22 -36.11 15 15 H 0.03 1.79 7.74 -2.91 -0.02 1.77 15 16 C -0.01 -0.58 5.39 84.65 0.46 -0.12 15 17 N -0.92 -58.04 13.51 21.45 0.29 -57.75 15 18 Si 1.11 52.92 29.90 68.60 2.05 54.97 15 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 15 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 22 H 0.11 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.08 1.19 7.66 -2.39 -0.02 1.17 15 24 H 0.07 1.22 7.66 -2.39 -0.02 1.20 15 25 H 0.18 2.85 6.30 -2.91 -0.02 2.83 15 26 H 0.18 2.84 8.06 -2.91 -0.02 2.81 15 27 H 0.33 16.87 6.11 -89.70 -0.55 16.32 15 28 H 0.31 14.09 9.06 -89.69 -0.81 13.28 15 29 H 0.28 17.82 6.39 -92.70 -0.59 17.23 15 Total: -1.00 -72.97 268.20 3.37 -69.60 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.03 Total: 23.84 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 2.66 Total: -27.19 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -1.05 Total: -101.89 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.86 Total: -12.59 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.62 Total: -5.17 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 2.05 Total: 54.97 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.56 kcal Total: -72.97 3.37 -69.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990865.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.104 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds