Wall clock time and date at job start Mon Mar 30 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35975 * 116.99960 * 2 1 4 4 C 1.38833 * 120.02946 * 269.97666 * 3 2 1 5 5 Cl 1.73603 * 120.02961 * 359.97438 * 4 3 2 6 6 C 1.38221 * 119.94853 * 180.02562 * 4 3 2 7 7 C 1.38477 * 120.01464 * 359.97438 * 6 4 3 8 8 F 1.35102 * 119.96410 * 179.97438 * 7 6 4 9 9 C 1.38432 * 120.06979 * 359.75241 * 7 6 4 10 10 C 1.38200 * 120.04628 * 0.50096 * 9 7 6 11 11 C 1.50696 * 120.00526 * 179.77304 * 10 9 7 12 12 H 1.09001 * 109.47545 * 144.72737 * 11 10 9 13 13 N 1.46900 * 109.47209 * 24.72435 * 11 10 9 14 14 C 1.50706 * 109.47259 * 264.72397 * 11 10 9 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47507 * 300.00167 * 1 2 3 24 24 H 1.08998 * 109.47284 * 60.00391 * 1 2 3 25 25 H 1.07992 * 119.99551 * 179.97438 * 6 4 3 26 26 H 1.07994 * 119.97288 * 180.25207 * 9 7 6 27 27 H 1.00900 * 111.00100 * 299.99420 * 13 11 10 28 28 H 1.00898 * 111.00378 * 63.95632 * 13 11 10 29 29 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 2.3621 1.8304 -1.2020 5 17 1.9699 1.0578 -2.7063 6 6 2.9901 3.0617 -1.2000 7 6 3.3033 3.6776 0.0000 8 9 3.9176 4.8809 0.0007 9 6 2.9836 3.0638 1.1989 10 6 2.3604 1.8303 1.2002 11 6 2.0174 1.1606 2.5058 12 1 1.0785 0.6172 2.3999 13 7 1.8786 2.1779 3.5564 14 6 3.1151 0.1982 2.8804 15 1 3.9752 0.0834 2.2374 16 6 3.0212 -0.5356 4.0438 17 7 1.9735 -0.3962 4.8265 18 14 4.3814 -1.7290 4.5076 19 1 4.0840 -3.0660 3.9337 20 1 5.6758 -1.2369 3.9715 21 1 4.4656 -1.8329 5.9867 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 3.2365 3.5436 -2.1345 26 1 3.2250 3.5474 2.1339 27 1 2.7367 2.6956 3.6740 28 1 1.1066 2.7972 3.3603 29 1 1.2670 0.2232 4.5854 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033516.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:20 Heat of formation + Delta-G solvation = -82.123983 kcal Electronic energy + Delta-G solvation = -17424.019077 eV Core-core repulsion = 14287.106994 eV Total energy + Delta-G solvation = -3136.912083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.07159 -41.26958 -38.33074 -37.83544 -36.57031 -33.60769 -31.11692 -30.96331 -28.09406 -27.47265 -25.07961 -23.46276 -22.35208 -19.21401 -18.89356 -18.42275 -18.18984 -16.94863 -16.51089 -16.43185 -15.89156 -15.74711 -15.56465 -15.35414 -14.92988 -14.37916 -14.10641 -13.80993 -13.72199 -12.87518 -12.74493 -12.56631 -12.27468 -12.22996 -12.09985 -11.90223 -11.03613 -10.89130 -10.46919 -9.89888 -9.57487 -9.41018 -8.37709 -6.22155 -0.26155 -0.07633 0.85609 1.57251 1.64548 1.81972 2.11353 2.63577 2.71840 3.05904 3.32893 3.55241 3.75498 4.03107 4.10347 4.25312 4.34082 4.37257 4.48559 4.66038 4.71112 4.81231 4.98907 5.31267 5.45248 5.90672 6.20211 6.39884 6.62246 6.77945 6.99693 7.65375 9.00254 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.007859 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.197189 B = 3561.930091 C = 4197.611153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.335 6.335 3 C 0.087 3.913 4 C -0.032 4.032 5 Cl -0.039 7.039 6 C -0.142 4.142 7 C 0.109 3.891 8 F -0.131 7.131 9 C -0.149 4.149 10 C -0.072 4.072 11 C 0.253 3.747 12 H 0.026 0.974 13 N -0.836 5.836 14 C -0.607 4.607 15 H 0.030 0.970 16 C -0.004 4.004 17 N -0.917 5.917 18 Si 1.107 2.893 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.284 1.284 22 H 0.110 0.890 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.175 0.825 26 H 0.145 0.855 27 H 0.333 0.667 28 H 0.321 0.679 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 6.576 -12.697 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.251 6.251 3 C 0.041 3.959 4 C -0.060 4.060 5 Cl -0.010 7.010 6 C -0.162 4.162 7 C 0.089 3.911 8 F -0.109 7.109 9 C -0.168 4.168 10 C -0.076 4.076 11 C 0.143 3.857 12 H 0.043 0.957 13 N -0.366 5.366 14 C -0.645 4.645 15 H 0.049 0.951 16 C -0.208 4.208 17 N -0.552 5.552 18 Si 0.931 3.069 19 H -0.205 1.205 20 H -0.205 1.205 21 H -0.210 1.210 22 H 0.128 0.872 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.192 0.808 26 H 0.162 0.838 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.979 4.685 -11.174 12.156 hybrid contribution -0.406 2.028 -1.890 2.801 sum -1.385 6.713 -13.064 14.753 Atomic orbital electron populations 1.23123 0.77660 1.04599 1.00574 1.86099 1.21152 1.23783 1.94096 1.18436 0.99540 0.87369 0.90507 1.21061 1.03294 0.94471 0.87137 1.98352 1.92530 1.80760 1.29308 1.20938 1.02010 0.94334 0.98883 1.17321 0.97696 0.82452 0.93634 1.91509 1.80301 1.41771 1.97343 1.21027 1.01579 0.95910 0.98318 1.21474 0.95437 0.93003 0.97650 1.17935 0.96251 0.89633 0.81890 0.95662 1.59178 1.08562 1.19337 1.49539 1.21816 1.06771 1.26112 1.09851 0.95144 1.26778 1.01806 0.99212 0.93024 1.70648 1.09330 1.36405 1.38815 0.83055 0.73231 0.74631 0.75949 1.20513 1.20502 1.20973 0.87170 0.94459 0.91987 0.80792 0.83783 0.85280 0.86641 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.80 113.37 1.22 2.26 15 2 O -0.33 -13.07 9.15 -93.27 -0.85 -13.93 15 3 C 0.09 3.28 5.69 22.51 0.13 3.41 15 4 C -0.03 -1.00 6.33 22.41 0.14 -0.86 15 5 Cl -0.04 -1.03 28.50 -2.72 -0.08 -1.11 15 6 C -0.14 -3.93 9.80 22.32 0.22 -3.71 15 7 C 0.11 3.28 7.30 22.37 0.16 3.44 15 8 F -0.13 -3.69 17.27 44.97 0.78 -2.92 15 9 C -0.15 -5.17 9.24 22.31 0.21 -4.96 15 10 C -0.07 -2.90 5.00 -19.78 -0.10 -3.00 15 11 C 0.25 11.95 2.19 43.42 0.09 12.05 15 12 H 0.03 1.32 6.28 -2.39 -0.01 1.31 15 13 N -0.84 -36.12 7.39 -174.95 -1.29 -37.42 15 14 C -0.61 -33.39 8.71 25.60 0.22 -33.17 15 15 H 0.03 1.74 7.74 -2.91 -0.02 1.71 15 16 C 0.00 -0.23 5.39 84.65 0.46 0.23 15 17 N -0.92 -54.46 13.51 21.45 0.29 -54.17 15 18 Si 1.11 50.82 29.90 68.60 2.05 52.87 15 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 22 H 0.11 2.93 8.14 -2.39 -0.02 2.91 15 23 H 0.04 1.19 7.17 -2.39 -0.02 1.18 15 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.17 3.65 8.06 -2.91 -0.02 3.63 15 26 H 0.14 4.74 6.28 -2.91 -0.02 4.72 15 27 H 0.33 13.72 7.21 -89.69 -0.65 13.08 15 28 H 0.32 11.90 9.06 -89.70 -0.81 11.09 15 29 H 0.28 16.61 6.40 -92.71 -0.59 16.02 15 Total: -1.00 -62.61 271.95 3.59 -59.03 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.07 Total: 21.95 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 2.76 Total: -24.31 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -1.00 Total: -91.59 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.85 Total: -13.93 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -62.61 3.59 -59.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033516.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.094 kcal (2) G-P(sol) polarization free energy of solvation -62.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds