Wall clock time and date at job start Mon Mar 30 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35974 * 117.00197 * 2 1 4 4 C 1.38834 * 120.03303 * 89.99797 * 3 2 1 5 5 Cl 1.73597 * 120.02483 * 0.04907 * 4 3 2 6 6 C 1.38223 * 119.94592 * 180.02562 * 4 3 2 7 7 C 1.38470 * 120.01973 * 359.97438 * 6 4 3 8 8 F 1.35098 * 119.96799 * 180.02562 * 7 6 4 9 9 C 1.38425 * 120.06981 * 359.97438 * 7 6 4 10 10 C 1.38203 * 120.05036 * 0.02562 * 9 7 6 11 11 C 1.50698 * 120.00741 * 179.97438 * 10 9 7 12 12 H 1.09009 * 109.47011 * 219.99962 * 11 10 9 13 13 N 1.46903 * 109.47434 * 339.99581 * 11 10 9 14 14 C 1.50694 * 109.47289 * 100.00486 * 11 10 9 15 15 H 1.07994 * 120.00379 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00109 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99836 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00149 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47113 * 89.99383 * 18 16 14 20 20 H 1.48499 * 109.46793 * 209.99746 * 18 16 14 21 21 H 1.48498 * 109.46847 * 329.99085 * 18 16 14 22 22 H 1.09011 * 109.47133 * 59.99839 * 1 2 3 23 23 H 1.09001 * 109.47052 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46989 * 300.00066 * 1 2 3 25 25 H 1.08000 * 119.98849 * 179.97438 * 6 4 3 26 26 H 1.08002 * 119.97417 * 179.75103 * 9 7 6 27 27 H 1.00902 * 110.99713 * 296.05250 * 13 11 10 28 28 H 1.00893 * 110.99456 * 60.00514 * 13 11 10 29 29 H 0.97008 * 120.00146 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 2.3618 1.8306 1.2019 5 17 1.9695 1.0581 2.7062 6 6 2.9888 3.0624 1.1998 7 6 3.3026 3.6780 -0.0002 8 9 3.9159 4.8817 -0.0010 9 6 2.9894 3.0609 -1.1990 10 6 2.3624 1.8293 -1.2003 11 6 2.0213 1.1586 -2.5059 12 1 1.0408 0.6887 -2.4278 13 7 1.9999 2.1603 -3.5802 14 6 3.0574 0.1097 -2.8176 15 1 3.8808 -0.0546 -2.1384 16 6 2.9548 -0.6397 -3.9704 17 7 1.9524 -0.4393 -4.7978 18 14 4.2396 -1.9394 -4.3571 19 1 3.8214 -3.2384 -3.7715 20 1 4.3735 -2.0803 -5.8293 21 1 5.5450 -1.5326 -3.7780 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.2342 3.5449 2.1344 26 1 3.2311 3.5443 -2.1340 27 1 1.2693 2.8392 -3.4270 28 1 2.8982 2.6104 -3.6727 29 1 1.8799 -0.9667 -5.6088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033535.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:23 Heat of formation + Delta-G solvation = -75.333799 kcal Electronic energy + Delta-G solvation = -17389.296947 eV Core-core repulsion = 14252.679308 eV Total energy + Delta-G solvation = -3136.617639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.00553 -41.15713 -38.22038 -37.73049 -36.25034 -33.71008 -31.00753 -30.86502 -28.22631 -27.57792 -25.13717 -23.36614 -22.08592 -18.94121 -18.60336 -18.34297 -18.12715 -16.83026 -16.58146 -16.33534 -16.10044 -15.75055 -15.49322 -14.91567 -14.83692 -14.38058 -14.08136 -13.87525 -13.24369 -12.97449 -12.75009 -12.63350 -12.45528 -12.19628 -12.09827 -11.77221 -11.29175 -10.91099 -10.53130 -9.85281 -9.48752 -9.00554 -7.97646 -6.16289 -0.17751 0.01032 0.92490 1.44001 1.45863 1.54202 2.19300 2.50139 2.81265 3.13846 3.28107 3.64609 3.84939 4.11772 4.25029 4.40680 4.43475 4.48219 4.59110 4.76034 4.80512 4.95103 5.13187 5.48760 5.54643 5.76767 6.15322 6.50032 6.63266 7.06110 7.22228 7.54166 9.05823 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.007903 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.419606 B = 3541.954889 C = 4210.976740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.333 6.333 3 C 0.089 3.911 4 C -0.034 4.034 5 Cl -0.042 7.042 6 C -0.145 4.145 7 C 0.107 3.893 8 F -0.132 7.132 9 C -0.150 4.150 10 C -0.077 4.077 11 C 0.270 3.730 12 H 0.030 0.970 13 N -0.820 5.820 14 C -0.531 4.531 15 H 0.039 0.961 16 C 0.042 3.958 17 N -0.876 5.876 18 Si 0.942 3.058 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.274 1.274 22 H 0.038 0.962 23 H 0.108 0.892 24 H 0.059 0.941 25 H 0.172 0.828 26 H 0.146 0.854 27 H 0.316 0.684 28 H 0.326 0.674 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 6.410 11.874 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C 0.043 3.957 4 C -0.061 4.061 5 Cl -0.013 7.013 6 C -0.164 4.164 7 C 0.087 3.913 8 F -0.111 7.111 9 C -0.169 4.169 10 C -0.080 4.080 11 C 0.160 3.840 12 H 0.047 0.953 13 N -0.349 5.349 14 C -0.570 4.570 15 H 0.058 0.942 16 C -0.162 4.162 17 N -0.512 5.512 18 Si 0.768 3.232 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.199 1.199 22 H 0.056 0.944 23 H 0.127 0.873 24 H 0.078 0.922 25 H 0.190 0.810 26 H 0.164 0.836 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.679 5.539 11.323 12.717 hybrid contribution 0.757 0.158 0.416 0.878 sum -0.922 5.697 11.739 13.081 Atomic orbital electron populations 1.23095 0.77754 1.04461 1.00499 1.86094 1.21053 1.23729 1.94082 1.18443 0.99425 0.87363 0.90448 1.21079 1.03451 0.94494 0.87084 1.98348 1.92569 1.80808 1.29537 1.20908 1.02263 0.94379 0.98835 1.17333 0.97851 0.82388 0.93701 1.91502 1.80384 1.41824 1.97354 1.21070 1.01611 0.95930 0.98303 1.21761 0.95028 0.93035 0.98185 1.17756 0.96242 0.89404 0.80584 0.95266 1.58946 1.07726 1.18518 1.49675 1.20901 1.10395 1.19143 1.06544 0.94248 1.25516 0.96834 0.97899 0.95951 1.70190 1.30584 1.39211 1.11234 0.85842 0.80170 0.80091 0.77090 1.20451 1.20872 1.19928 0.94360 0.87334 0.92198 0.81030 0.83605 0.87242 0.86025 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 10.84 113.37 1.23 2.33 15 2 O -0.33 -13.03 9.20 -93.25 -0.86 -13.88 15 3 C 0.09 3.34 5.68 22.51 0.13 3.47 15 4 C -0.03 -1.05 6.33 22.41 0.14 -0.91 15 5 Cl -0.04 -1.13 28.50 -2.72 -0.08 -1.20 15 6 C -0.14 -4.01 9.80 22.32 0.22 -3.79 15 7 C 0.11 3.22 7.30 22.37 0.16 3.38 15 8 F -0.13 -3.73 17.27 44.97 0.78 -2.95 15 9 C -0.15 -5.15 9.22 22.31 0.21 -4.94 15 10 C -0.08 -3.06 5.03 -19.78 -0.10 -3.16 15 11 C 0.27 12.82 2.51 43.42 0.11 12.93 15 12 H 0.03 1.55 6.56 -2.38 -0.02 1.54 15 13 N -0.82 -36.17 8.01 -174.95 -1.40 -37.58 15 14 C -0.53 -28.75 8.71 25.60 0.22 -28.53 15 15 H 0.04 2.20 7.74 -2.91 -0.02 2.18 15 16 C 0.04 2.29 5.39 84.66 0.46 2.75 15 17 N -0.88 -49.96 12.77 21.45 0.27 -49.69 15 18 Si 0.94 43.81 29.54 68.60 2.03 45.84 15 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 21 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 22 H 0.04 1.25 7.12 -2.38 -0.02 1.24 15 23 H 0.11 2.93 8.14 -2.39 -0.02 2.91 15 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.17 3.66 8.06 -2.91 -0.02 3.63 15 26 H 0.15 4.72 6.25 -2.91 -0.02 4.70 15 27 H 0.32 12.12 9.06 -89.69 -0.81 11.31 15 28 H 0.33 13.56 7.28 -89.70 -0.65 12.91 15 29 H 0.26 14.00 8.31 -92.70 -0.77 13.23 15 Total: -1.00 -60.20 274.07 3.26 -56.94 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.25 Total: 19.00 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 2.78 Total: -16.47 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -1.13 Total: -87.26 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.86 Total: -13.88 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -60.20 3.26 -56.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033535.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.398 kcal (2) G-P(sol) polarization free energy of solvation -60.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds