Wall clock time and date at job start Mon Mar 30 2020 07:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99770 * 2 1 4 4 H 1.48504 * 109.46959 * 239.99565 * 3 2 1 5 5 H 1.48503 * 109.47386 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47389 * 120.00238 * 3 2 1 7 7 C 1.37873 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.50709 * 109.47135 * 180.02562 * 9 7 2 11 11 N 1.29023 * 124.91372 * 90.00076 * 10 9 7 12 12 C 1.31784 * 117.12236 * 179.97438 * 11 10 9 13 13 C 1.50706 * 122.74680 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46830 * 304.97470 * 13 12 11 15 15 C 1.38236 * 120.00228 * 269.72844 * 14 13 12 16 16 C 1.38233 * 119.99722 * 179.77216 * 15 14 13 17 17 C 1.38232 * 120.00185 * 0.50540 * 16 15 14 18 18 C 1.38236 * 120.00156 * 359.74404 * 17 16 15 19 19 C 1.38233 * 119.99766 * 0.02562 * 18 17 16 20 20 C 1.33639 * 114.50230 * 0.02562 * 12 11 10 21 21 S 1.70979 * 124.91513 * 270.00424 * 10 9 7 22 22 H 0.97003 * 120.00113 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46790 * 60.00752 * 9 7 2 24 24 H 1.09000 * 109.47653 * 300.00484 * 9 7 2 25 25 H 1.08994 * 109.47031 * 64.97848 * 13 12 11 26 26 H 1.09002 * 109.46788 * 184.97707 * 13 12 11 27 27 H 1.08001 * 120.00065 * 0.02562 * 15 14 13 28 28 H 1.08008 * 119.99882 * 180.23263 * 16 15 14 29 29 H 1.08002 * 120.00258 * 179.72833 * 17 16 15 30 30 H 1.07999 * 120.00180 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.99849 * 179.97438 * 19 18 17 32 32 H 1.07997 * 126.03698 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2303 -3.6446 0.0027 11 7 2.7102 -4.2050 1.0612 12 6 3.5582 -5.1979 0.8835 13 6 4.1943 -5.9418 2.0295 14 6 4.8894 -4.9625 2.9399 15 6 6.2159 -4.6393 2.7235 16 6 6.8521 -3.7374 3.5558 17 6 6.1648 -3.1668 4.6108 18 6 4.8398 -3.4939 4.8302 19 6 4.2022 -4.3922 3.9951 20 6 3.8080 -5.4911 -0.3962 21 16 2.8663 -4.3896 -1.3986 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5574 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 3.4250 -6.4746 2.5883 26 1 4.9208 -6.6553 1.6408 27 1 6.7540 -5.0882 1.9017 28 1 7.8874 -3.4820 3.3845 29 1 6.6631 -2.4655 5.2637 30 1 4.3030 -3.0484 5.6547 31 1 3.1671 -4.6481 4.1668 32 1 4.4703 -6.2660 -0.7529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:43 Heat of formation + Delta-G solvation = 35.498686 kcal Electronic energy + Delta-G solvation = -16024.877056 eV Core-core repulsion = 13461.711500 eV Total energy + Delta-G solvation = -2563.165556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94211 -39.70628 -35.68929 -34.25667 -32.18858 -31.71902 -29.86238 -27.72174 -26.23402 -23.52800 -23.33138 -22.07483 -20.34281 -18.70179 -18.47997 -17.48635 -16.74913 -16.19911 -15.98149 -15.85842 -15.28084 -14.80770 -14.37522 -14.27755 -14.16263 -13.79068 -13.41857 -13.25149 -13.01042 -12.73857 -12.58783 -12.31240 -12.05093 -11.89634 -11.76330 -11.63174 -10.67634 -10.33759 -10.18692 -9.75441 -9.61192 -9.43300 -8.27046 -6.40103 -0.05344 0.47884 0.56797 0.63780 1.04493 1.37418 1.40317 1.48530 2.00426 2.38117 2.93131 3.05173 3.42038 3.96960 4.02370 4.20237 4.29034 4.32127 4.39524 4.52762 4.66759 4.70249 4.81433 4.88913 5.07096 5.18164 5.21515 5.26589 5.47068 5.60620 5.62703 5.66232 5.77820 6.01443 6.18787 6.66353 7.07645 7.27823 8.82994 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.007129 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.556600 B = 3926.851250 C = 5116.912129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.048 0.952 9 C 0.096 3.904 10 C 0.076 3.924 11 N -0.505 5.505 12 C 0.057 3.943 13 C 0.002 3.998 14 C -0.085 4.085 15 C -0.125 4.125 16 C -0.131 4.131 17 C -0.134 4.134 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.269 4.269 21 S 0.110 5.890 22 H 0.269 0.731 23 H 0.028 0.972 24 H 0.018 0.982 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.471 -11.407 3.579 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.067 0.933 9 C 0.056 3.944 10 C -0.202 4.202 11 N -0.220 5.220 12 C -0.075 4.075 13 C -0.038 4.038 14 C -0.085 4.085 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.135 4.135 20 C -0.407 4.407 21 S 0.365 5.635 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.108 0.892 26 H 0.139 0.861 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.997 -10.963 2.984 16.524 hybrid contribution 0.111 0.713 0.768 1.054 sum 12.108 -10.250 3.752 16.302 Atomic orbital electron populations 1.70038 1.07455 1.28378 1.50391 1.25814 0.95797 1.02814 0.94151 0.85517 0.78443 0.78145 0.79115 1.18833 1.19920 1.19912 1.21091 0.92711 0.90730 1.52275 0.93323 1.17705 0.91340 0.88120 0.97253 1.27484 1.01327 1.00310 0.91067 1.66113 1.13075 1.10506 1.32349 1.20529 0.96780 0.95112 0.95061 1.19259 0.99037 0.94501 0.90992 1.19842 0.94361 0.98825 0.95510 1.21307 0.94253 0.98813 0.99937 1.21436 1.01046 0.97063 0.95312 1.21431 0.94663 1.00312 0.98782 1.21388 0.95739 0.98084 1.00247 1.21170 0.99354 0.97466 0.95513 1.27052 1.10410 1.08247 0.95002 1.83644 1.39303 1.27049 1.13482 0.92175 0.95359 0.96385 0.89165 0.86130 0.84317 0.83887 0.84277 0.85290 0.86984 0.77220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.29 21.45 0.28 -54.92 16 2 C 0.01 0.78 5.46 84.65 0.46 1.25 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.53 -30.74 9.09 25.60 0.23 -30.51 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.10 5.25 5.56 29.10 0.16 5.42 16 10 C 0.08 3.51 6.58 88.52 0.58 4.09 16 11 N -0.51 -22.23 10.39 -179.39 -1.86 -24.10 16 12 C 0.06 1.94 6.07 41.52 0.25 2.19 16 13 C 0.00 0.04 5.84 29.10 0.17 0.21 16 14 C -0.08 -2.48 5.01 -19.86 -0.10 -2.58 16 15 C -0.13 -3.25 9.70 22.27 0.22 -3.04 16 16 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 17 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 18 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 19 C -0.12 -3.69 9.70 22.27 0.22 -3.48 16 20 C -0.27 -7.91 11.07 66.78 0.74 -7.17 16 21 S 0.11 3.96 23.18 -56.49 -1.31 2.65 16 22 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 23 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 26 H 0.12 2.17 7.97 -2.39 -0.02 2.15 16 27 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.11 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.21 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -68.04 298.67 3.85 -64.19 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.11 Total: 9.09 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 3.60 Total: -43.58 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.58 Total: -79.01 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.31 Total: 2.65 kcal Total: -68.04 3.85 -64.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.689 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds