Wall clock time and date at job start Mon Mar 30 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99935 * 2 1 4 4 H 1.48496 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46979 * 300.00291 * 3 2 1 6 6 H 1.48504 * 109.46729 * 60.00071 * 3 2 1 7 7 C 1.37880 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99679 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46754 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46994 * 60.00285 * 9 7 2 12 12 C 1.39675 * 119.99953 * 84.99844 * 11 9 7 13 13 C 1.38914 * 120.07282 * 179.97438 * 12 11 9 14 14 C 1.38100 * 119.92419 * 180.02562 * 13 12 11 15 15 C 1.38288 * 120.07489 * 359.97438 * 14 13 12 16 16 C 1.38283 * 120.14964 * 0.27921 * 15 14 13 17 17 C 1.38104 * 120.07445 * 359.44998 * 16 15 14 18 18 C 1.50691 * 109.47023 * 300.00143 * 9 7 2 19 19 C 1.33393 * 125.20407 * 260.00080 * 18 9 7 20 20 C 1.38423 * 114.92391 * 179.97438 * 19 18 9 21 21 C 1.33384 * 114.91982 * 359.97438 * 20 19 18 22 22 S 1.75879 * 109.59400 * 359.75650 * 21 20 19 23 23 H 0.96993 * 120.00414 * 0.02562 * 1 2 3 24 24 H 0.96997 * 119.99634 * 264.99793 * 11 9 7 25 25 H 1.07999 * 120.03471 * 359.97438 * 13 12 11 26 26 H 1.08000 * 119.95830 * 180.02562 * 14 13 12 27 27 H 1.08002 * 119.92149 * 179.97438 * 15 14 13 28 28 H 1.08001 * 119.96059 * 179.69879 * 16 15 14 29 29 H 1.07999 * 120.04053 * 180.27967 * 17 16 15 30 30 H 1.08005 * 122.53850 * 0.02562 * 19 18 9 31 31 H 1.07999 * 122.53820 * 180.02562 * 20 19 18 32 32 H 1.07999 * 125.20253 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 1.9595 -3.3276 -0.0015 11 7 0.4084 -2.5765 -1.1965 12 6 0.9448 -3.0402 -2.3999 13 6 0.1470 -3.1146 -3.5347 14 6 0.6804 -3.5740 -4.7228 15 6 2.0071 -3.9591 -4.7839 16 6 2.8027 -3.8912 -3.6548 17 6 2.2772 -3.4275 -2.4648 18 6 0.3852 -2.5793 1.2302 19 6 0.6867 -3.2553 2.3399 20 6 -0.2641 -3.1833 3.3433 21 6 -1.3375 -2.4483 3.0486 22 16 -1.1735 -1.7885 1.4266 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5219 -2.3058 -1.1525 25 1 -0.8893 -2.8144 -3.4875 26 1 0.0607 -3.6317 -5.6055 27 1 2.4216 -4.3184 -5.7142 28 1 3.8372 -4.1973 -3.7048 29 1 2.9003 -3.3704 -1.5845 30 1 1.6036 -3.8157 2.4476 31 1 -0.1455 -3.6835 4.2930 32 1 -2.1772 -2.2808 3.7069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260052413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:11 Heat of formation + Delta-G solvation = 58.835276 kcal Electronic energy + Delta-G solvation = -16654.716427 eV Core-core repulsion = 14092.562822 eV Total energy + Delta-G solvation = -2562.153606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.57528 -36.84303 -35.02589 -32.52706 -30.27486 -29.78518 -27.42290 -26.30736 -23.43883 -22.25417 -21.40358 -20.37972 -18.30968 -16.97483 -16.40346 -16.08510 -15.10848 -14.93352 -14.21141 -14.07327 -13.32543 -13.11812 -12.76493 -12.63094 -12.23404 -11.89006 -11.67970 -11.38798 -11.12435 -11.02129 -10.94918 -10.68582 -10.34342 -10.28144 -10.00215 -9.32399 -9.10452 -8.87649 -8.19720 -7.47709 -7.27933 -6.39315 -6.09943 -4.48722 2.18800 2.23078 2.46535 2.97453 3.12195 3.21497 3.25753 3.43112 3.82335 4.18781 4.58192 4.74033 5.06692 5.61271 5.63533 5.89676 5.97916 6.09833 6.19301 6.35105 6.49857 6.51142 6.59545 6.69801 6.77987 7.16212 7.22874 7.23175 7.34970 7.43227 7.51976 7.57565 7.71761 7.82231 8.32454 8.66534 8.91136 9.19657 10.59400 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.008653 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.388540 B = 3235.159621 C = 4127.010311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.505 4.505 8 H 0.069 0.931 9 C 0.322 3.678 10 H 0.054 0.946 11 N -0.707 5.707 12 C 0.251 3.749 13 C -0.221 4.221 14 C -0.074 4.074 15 C -0.215 4.215 16 C -0.075 4.075 17 C -0.200 4.200 18 C -0.129 4.129 19 C -0.196 4.196 20 C -0.139 4.139 21 C -0.325 4.325 22 S 0.239 5.761 23 H 0.275 0.725 24 H 0.391 0.609 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -4.198 -1.841 4.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.544 4.544 8 H 0.087 0.913 9 C 0.218 3.782 10 H 0.071 0.929 11 N -0.330 5.330 12 C 0.141 3.859 13 C -0.244 4.244 14 C -0.093 4.093 15 C -0.235 4.235 16 C -0.094 4.094 17 C -0.223 4.223 18 C -0.249 4.249 19 C -0.226 4.226 20 C -0.171 4.171 21 C -0.462 4.462 22 S 0.504 5.496 23 H 0.086 0.914 24 H 0.226 0.774 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.877 -3.093 -2.513 4.405 hybrid contribution 1.021 0.341 1.237 1.640 sum -0.855 -2.752 -1.276 3.152 Atomic orbital electron populations 1.68687 1.06096 1.27523 1.48179 1.24945 0.94694 0.99869 0.93672 0.86277 0.80177 0.82387 0.77793 1.19478 1.20646 1.20695 1.21649 0.93612 0.90340 1.48832 0.91322 1.17132 0.86826 0.96125 0.78142 0.92856 1.45751 1.13273 1.66852 1.07077 1.17911 0.92235 0.89283 0.86514 1.20490 0.99673 1.11318 0.92967 1.20649 0.95009 0.97281 0.96334 1.20574 0.94844 1.10005 0.98123 1.20758 0.98421 0.97473 0.92708 1.20655 0.94644 1.08239 0.98786 1.24996 0.98729 0.99898 1.01298 1.19648 1.01575 1.07122 0.94206 1.19709 0.95295 1.02563 0.99519 1.26444 1.03542 1.07345 1.08864 1.84914 1.13822 1.43238 1.07660 0.91359 0.77412 0.87352 0.87572 0.87882 0.87457 0.86145 0.86489 0.87376 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.08 8.55 55.43 0.47 -20.61 16 2 C 0.07 1.76 5.23 -17.82 -0.09 1.67 16 3 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -12.52 8.75 -34.44 -0.30 -12.82 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.32 7.35 2.29 -70.23 -0.16 7.19 16 10 H 0.05 1.19 6.46 -51.93 -0.34 0.86 16 11 N -0.71 -15.50 4.64 -54.42 -0.25 -15.75 16 12 C 0.25 5.21 6.63 -83.79 -0.56 4.66 16 13 C -0.22 -4.17 9.90 -39.38 -0.39 -4.56 16 14 C -0.07 -1.25 10.04 -39.61 -0.40 -1.64 16 15 C -0.21 -3.55 10.04 -39.55 -0.40 -3.94 16 16 C -0.07 -1.30 10.04 -39.61 -0.40 -1.69 16 17 C -0.20 -3.96 9.16 -39.38 -0.36 -4.32 16 18 C -0.13 -2.89 5.12 -36.01 -0.18 -3.07 16 19 C -0.20 -4.13 10.04 -41.21 -0.41 -4.54 16 20 C -0.14 -2.74 10.18 -41.21 -0.42 -3.16 16 21 C -0.32 -6.38 11.23 29.04 0.33 -6.05 16 22 S 0.24 5.05 18.75 -107.50 -2.02 3.03 16 23 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 24 H 0.39 8.64 7.38 -40.82 -0.30 8.34 16 25 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 26 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.12 2.42 6.20 -52.49 -0.33 2.09 16 30 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 31 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -25.20 284.01 -9.75 -34.95 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -3.47 Total: 11.34 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -3.75 Total: -32.29 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.22 Total: -36.36 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -2.02 Total: 3.03 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.20 -9.75 -34.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.783 kcal (2) G-P(sol) polarization free energy of solvation -25.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds