Wall clock time and date at job start Mon Mar 30 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99935 * 2 1 4 4 H 1.48496 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46979 * 300.00291 * 3 2 1 6 6 H 1.48504 * 109.46729 * 60.00071 * 3 2 1 7 7 C 1.37880 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99679 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46754 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46994 * 60.00285 * 9 7 2 12 12 C 1.39675 * 119.99953 * 84.99844 * 11 9 7 13 13 C 1.38914 * 120.07282 * 179.97438 * 12 11 9 14 14 C 1.38100 * 119.92419 * 180.02562 * 13 12 11 15 15 C 1.38288 * 120.07489 * 359.97438 * 14 13 12 16 16 C 1.38283 * 120.14964 * 0.27921 * 15 14 13 17 17 C 1.38104 * 120.07445 * 359.44998 * 16 15 14 18 18 C 1.50691 * 109.47023 * 300.00143 * 9 7 2 19 19 C 1.33393 * 125.20407 * 260.00080 * 18 9 7 20 20 C 1.38423 * 114.92391 * 179.97438 * 19 18 9 21 21 C 1.33384 * 114.91982 * 359.97438 * 20 19 18 22 22 S 1.75879 * 109.59400 * 359.75650 * 21 20 19 23 23 H 0.96993 * 120.00414 * 0.02562 * 1 2 3 24 24 H 0.96997 * 119.99634 * 264.99793 * 11 9 7 25 25 H 1.07999 * 120.03471 * 359.97438 * 13 12 11 26 26 H 1.08000 * 119.95830 * 180.02562 * 14 13 12 27 27 H 1.08002 * 119.92149 * 179.97438 * 15 14 13 28 28 H 1.08001 * 119.96059 * 179.69879 * 16 15 14 29 29 H 1.07999 * 120.04053 * 180.27967 * 17 16 15 30 30 H 1.08005 * 122.53850 * 0.02562 * 19 18 9 31 31 H 1.07999 * 122.53820 * 180.02562 * 20 19 18 32 32 H 1.07999 * 125.20253 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 1.9595 -3.3276 -0.0015 11 7 0.4084 -2.5765 -1.1965 12 6 0.9448 -3.0402 -2.3999 13 6 0.1470 -3.1146 -3.5347 14 6 0.6804 -3.5740 -4.7228 15 6 2.0071 -3.9591 -4.7839 16 6 2.8027 -3.8912 -3.6548 17 6 2.2772 -3.4275 -2.4648 18 6 0.3852 -2.5793 1.2302 19 6 0.6867 -3.2553 2.3399 20 6 -0.2641 -3.1833 3.3433 21 6 -1.3375 -2.4483 3.0486 22 16 -1.1735 -1.7885 1.4266 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5219 -2.3058 -1.1525 25 1 -0.8893 -2.8144 -3.4875 26 1 0.0607 -3.6317 -5.6055 27 1 2.4216 -4.3184 -5.7142 28 1 3.8372 -4.1973 -3.7048 29 1 2.9003 -3.3704 -1.5845 30 1 1.6036 -3.8157 2.4476 31 1 -0.1455 -3.6835 4.2930 32 1 -2.1772 -2.2808 3.7069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:11 Heat of formation + Delta-G solvation = 47.885337 kcal Electronic energy + Delta-G solvation = -16655.191252 eV Core-core repulsion = 14092.562822 eV Total energy + Delta-G solvation = -2562.628431 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05404 -38.44122 -36.63860 -34.25371 -31.79041 -31.30253 -28.95979 -28.04261 -25.12045 -23.78835 -22.89295 -21.91519 -19.90172 -18.72253 -17.98886 -17.64387 -16.76617 -16.52452 -15.78919 -15.62635 -14.97003 -14.65390 -14.31705 -14.03252 -13.77608 -13.56374 -13.28901 -12.99405 -12.87058 -12.73960 -12.58292 -12.13047 -12.01709 -11.91449 -11.53934 -11.00869 -10.78857 -10.56311 -9.61204 -9.12724 -8.96687 -8.07165 -7.77816 -6.36187 0.60352 0.76503 1.03787 1.33328 1.35574 1.40839 1.48646 1.80161 2.20778 2.37324 2.90536 3.27167 3.31264 4.23421 4.34141 4.49070 4.51169 4.54550 4.79440 4.83743 4.94077 4.95040 5.06540 5.14257 5.37553 5.58253 5.62101 5.73392 5.82886 5.83562 5.94378 5.95071 6.05742 6.29958 6.54315 6.97154 7.23447 7.37029 8.74354 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.008653 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.388540 B = 3235.159621 C = 4127.010311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.040 3.960 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.328 3.672 10 H 0.045 0.955 11 N -0.715 5.715 12 C 0.222 3.778 13 C -0.233 4.233 14 C -0.072 4.072 15 C -0.207 4.207 16 C -0.076 4.076 17 C -0.221 4.221 18 C -0.156 4.156 19 C -0.200 4.200 20 C -0.145 4.145 21 C -0.317 4.317 22 S 0.222 5.778 23 H 0.274 0.726 24 H 0.386 0.614 25 H 0.112 0.888 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -4.730 -2.459 5.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.162 4.162 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.223 3.777 10 H 0.063 0.937 11 N -0.338 5.338 12 C 0.113 3.887 13 C -0.257 4.257 14 C -0.091 4.091 15 C -0.228 4.228 16 C -0.095 4.095 17 C -0.245 4.245 18 C -0.276 4.276 19 C -0.231 4.231 20 C -0.177 4.177 21 C -0.454 4.454 22 S 0.487 5.513 23 H 0.085 0.915 24 H 0.220 0.780 25 H 0.130 0.870 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.156 0.844 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.041 -3.641 -3.155 5.232 hybrid contribution 1.076 0.401 1.376 1.792 sum -0.965 -3.241 -1.778 3.821 Atomic orbital electron populations 1.68851 1.06294 1.27678 1.48191 1.25423 0.95467 1.01571 0.93763 0.85589 0.79074 0.80020 0.77471 1.19877 1.20811 1.20583 1.21745 0.93135 0.91742 1.50051 0.92774 1.16925 0.86951 0.94883 0.78893 0.93728 1.45526 1.12799 1.68145 1.07349 1.18241 0.93070 0.90578 0.86781 1.20711 0.99924 1.11765 0.93285 1.21064 0.95714 0.95772 0.96544 1.21026 0.94541 1.08221 0.98997 1.21100 0.99909 0.96477 0.92021 1.20733 0.94455 1.09720 0.99566 1.25083 0.99685 1.01241 1.01601 1.19986 1.02295 1.06601 0.94206 1.20000 0.94695 1.02625 1.00353 1.26710 1.04373 1.06459 1.07845 1.84812 1.13495 1.43890 1.09090 0.91515 0.77964 0.86954 0.84268 0.84423 0.84852 0.87625 0.85541 0.84361 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.01 8.55 21.45 0.18 -42.83 16 2 C 0.04 2.01 5.23 84.66 0.44 2.45 16 3 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -26.99 8.75 25.60 0.22 -26.77 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.33 15.52 2.29 43.50 0.10 15.62 16 10 H 0.04 2.11 6.46 -2.39 -0.02 2.09 16 11 N -0.71 -32.34 4.64 -326.08 -1.51 -33.85 16 12 C 0.22 9.36 6.63 38.21 0.25 9.62 16 13 C -0.23 -8.68 9.90 22.40 0.22 -8.46 16 14 C -0.07 -2.25 10.04 22.25 0.22 -2.03 16 15 C -0.21 -6.20 10.04 22.29 0.22 -5.98 16 16 C -0.08 -2.53 10.04 22.25 0.22 -2.31 16 17 C -0.22 -8.89 9.16 22.40 0.21 -8.68 16 18 C -0.16 -7.09 5.12 24.59 0.13 -6.97 16 19 C -0.20 -8.38 10.04 21.22 0.21 -8.16 16 20 C -0.15 -5.45 10.18 21.21 0.22 -5.24 16 21 C -0.32 -11.83 11.23 66.72 0.75 -11.08 16 22 S 0.22 9.37 18.75 -56.49 -1.06 8.31 16 23 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 24 H 0.39 17.66 7.38 -92.71 -0.68 16.98 16 25 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 26 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 27 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 28 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.11 4.45 6.20 -2.91 -0.02 4.43 16 30 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 31 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.16 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -53.62 284.01 3.51 -50.12 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.45 Total: 32.57 kcal Atomic # 6 Polarization: -61.41 SS G_CDS: 3.42 Total: -57.99 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -1.33 Total: -76.68 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 9.37 SS G_CDS: -1.06 Total: 8.31 kcal Total: -53.62 3.51 -50.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.004 kcal (2) G-P(sol) polarization free energy of solvation -53.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds