Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38363 * 119.96301 * 2 1 4 4 Cl 1.73597 * 119.94743 * 0.25492 * 3 2 1 5 5 C 1.38353 * 120.10385 * 180.27406 * 3 2 1 6 6 C 1.38334 * 120.01346 * 0.02562 * 5 3 2 7 7 F 1.35102 * 120.03898 * 180.02562 * 6 5 3 8 8 C 1.38903 * 119.91749 * 359.97438 * 6 5 3 9 9 O 1.35984 * 120.04476 * 179.97438 * 8 6 5 10 10 C 1.38183 * 119.95553 * 180.27853 * 2 1 3 11 11 C 1.50703 * 120.01050 * 359.74247 * 10 2 1 12 12 H 1.09004 * 109.46600 * 12.26524 * 11 10 2 13 13 N 1.46898 * 109.47181 * 132.26350 * 11 10 2 14 14 C 1.50697 * 109.47435 * 252.26747 * 11 10 2 15 15 H 1.08003 * 119.99638 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00068 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00568 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99815 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46912 * 120.00468 * 18 16 14 21 21 H 1.48496 * 109.47222 * 239.99730 * 18 16 14 22 22 H 1.08999 * 109.46988 * 263.88826 * 1 2 3 23 23 H 1.09001 * 109.46826 * 23.87707 * 1 2 3 24 24 H 1.08993 * 109.47553 * 143.88267 * 1 2 3 25 25 H 1.07989 * 119.99598 * 179.97438 * 5 3 2 26 26 H 0.96694 * 114.00286 * 270.01952 * 9 8 6 27 27 H 1.00905 * 111.00074 * 296.05089 * 13 11 10 28 28 H 1.00898 * 110.99589 * 60.00049 * 13 11 10 29 29 H 0.96990 * 120.00500 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1987 0.0000 4 17 1.3277 2.7007 0.0067 5 6 3.5816 1.2021 -0.0057 6 6 4.2764 0.0060 -0.0120 7 9 5.6274 0.0087 -0.0171 8 6 3.5834 -1.1978 -0.0120 9 8 4.2639 -2.3752 -0.0187 10 6 2.1970 -1.1972 -0.0058 11 6 1.4427 -2.5019 -0.0063 12 1 0.3906 -2.3132 -0.2200 13 7 2.0000 -3.3893 -1.0358 14 6 1.5711 -3.1570 1.3448 15 1 2.1423 -2.6767 2.1256 16 6 0.9596 -4.3692 1.5840 17 7 0.2638 -4.9538 0.6335 18 14 1.1195 -5.1816 3.2586 19 1 1.9475 -4.3265 4.1465 20 1 -0.2292 -5.3544 3.8557 21 1 1.7665 -6.5093 3.1050 22 1 -0.3633 -0.1094 1.0218 23 1 -0.3633 0.9397 -0.4160 24 1 -0.3634 -0.8301 -0.6057 25 1 4.1191 2.1387 -0.0061 26 1 4.4566 -2.7130 -0.9039 27 1 1.8679 -3.0013 -1.9578 28 1 2.9752 -3.5795 -0.8598 29 1 -0.1668 -5.8064 0.8019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060015.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = -64.769066 kcal Electronic energy + Delta-G solvation = -17522.119661 eV Core-core repulsion = 14385.960144 eV Total energy + Delta-G solvation = -3136.159518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.67044 -39.75707 -37.12960 -35.92496 -34.50745 -32.05392 -31.15035 -29.18656 -26.39454 -25.93537 -23.33064 -21.55115 -20.41112 -17.85312 -17.23518 -16.95638 -16.18216 -15.57264 -14.76866 -14.68028 -14.37000 -14.12121 -13.70686 -13.50946 -13.21538 -12.54439 -12.45853 -12.12992 -11.99612 -11.66365 -11.16405 -10.88784 -10.80815 -10.68495 -10.58034 -10.24567 -9.86659 -9.20352 -8.44119 -8.25108 -8.12612 -7.21720 -5.91371 -4.03716 1.18477 1.38288 2.19521 3.32793 3.41270 3.45914 3.60855 4.26432 4.48282 4.58602 4.96267 5.14084 5.33442 5.41110 5.73320 5.80014 6.00456 6.04531 6.20385 6.24795 6.41790 6.55581 6.59739 6.92959 7.36444 7.88447 7.92381 8.08711 8.51768 8.90226 9.07887 9.63440 11.13259 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.007733 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.756093 B = 3619.791672 C = 4261.091609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C -0.021 4.021 4 Cl -0.070 7.070 5 C -0.154 4.154 6 C 0.070 3.930 7 F -0.136 7.136 8 C 0.085 3.915 9 O -0.464 6.464 10 C -0.066 4.066 11 C 0.259 3.741 12 H 0.062 0.938 13 N -0.810 5.810 14 C -0.517 4.517 15 H 0.054 0.946 16 C 0.084 3.916 17 N -0.848 5.848 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.379 0.621 27 H 0.295 0.705 28 H 0.322 0.678 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 10.944 -4.187 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.047 4.047 4 Cl -0.041 7.041 5 C -0.174 4.174 6 C 0.050 3.950 7 F -0.114 7.114 8 C 0.039 3.961 9 O -0.273 6.273 10 C -0.070 4.070 11 C 0.149 3.851 12 H 0.079 0.921 13 N -0.342 5.342 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.122 4.122 17 N -0.483 5.483 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.099 0.901 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.157 0.843 26 H 0.236 0.764 27 H 0.105 0.895 28 H 0.140 0.860 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.603 10.398 -3.372 11.236 hybrid contribution 1.168 0.469 0.277 1.289 sum 3.771 10.866 -3.095 11.911 Atomic orbital electron populations 1.20894 0.89747 1.02862 1.03753 1.19685 0.97453 0.90022 1.00080 1.20463 0.91213 0.86720 1.06354 1.98329 1.76622 1.32165 1.96974 1.20582 0.92661 0.97376 1.06791 1.17910 0.77006 0.93729 1.06335 1.91464 1.28476 1.97337 1.94151 1.18355 0.90060 0.84172 1.03562 1.85041 1.75297 1.34706 1.32290 1.22042 0.92602 0.99323 0.92995 1.18355 0.93274 0.80645 0.92806 0.92081 1.59314 1.22309 1.50180 1.02369 1.20747 1.33969 1.05618 0.95290 0.92823 1.24892 0.94555 0.96768 0.96015 1.70093 1.31086 1.15935 1.31221 0.86667 0.77663 0.79548 0.84815 1.19887 1.21119 1.21026 0.90129 0.91672 0.89910 0.84251 0.76376 0.89497 0.86024 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.05 36.01 0.33 -1.53 15 2 C -0.07 -1.24 5.88 -104.60 -0.62 -1.86 15 3 C -0.02 -0.33 6.31 -39.49 -0.25 -0.58 15 4 Cl -0.07 -0.94 27.18 -51.86 -1.41 -2.35 15 5 C -0.15 -2.39 9.80 -39.50 -0.39 -2.77 15 6 C 0.07 1.21 7.31 -39.30 -0.29 0.92 15 7 F -0.14 -2.30 17.11 2.25 0.04 -2.26 15 8 C 0.08 1.60 6.46 -39.18 -0.25 1.35 15 9 O -0.46 -8.68 11.03 -19.69 -0.22 -8.90 15 10 C -0.07 -1.30 4.89 -104.49 -0.51 -1.81 15 11 C 0.26 5.93 2.54 -70.02 -0.18 5.75 15 12 H 0.06 1.49 5.57 -51.93 -0.29 1.20 15 13 N -0.81 -17.53 8.44 -6.65 -0.06 -17.59 15 14 C -0.52 -13.77 8.38 -34.44 -0.29 -14.05 15 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 15 16 C 0.08 2.29 5.39 -17.82 -0.10 2.19 15 17 N -0.85 -23.78 12.77 55.43 0.71 -23.08 15 18 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 15 22 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.06 0.89 6.65 -51.93 -0.35 0.55 15 24 H 0.08 1.37 6.24 -51.93 -0.32 1.05 15 25 H 0.14 1.81 8.06 -52.49 -0.42 1.39 15 26 H 0.38 5.37 7.75 45.56 0.35 5.73 15 27 H 0.29 5.55 9.06 -39.29 -0.36 5.20 15 28 H 0.32 6.58 5.35 -39.29 -0.21 6.37 15 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -29.28 266.27 -6.04 -35.32 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -1.56 Total: 10.98 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.54 Total: -12.39 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.65 Total: -40.66 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.22 Total: -8.90 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.41 Total: -2.35 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.28 -6.04 -35.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060015.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.447 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds