Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38363 * 119.96301 * 2 1 4 4 Cl 1.73597 * 119.94743 * 0.25492 * 3 2 1 5 5 C 1.38353 * 120.10385 * 180.27406 * 3 2 1 6 6 C 1.38334 * 120.01346 * 0.02562 * 5 3 2 7 7 F 1.35102 * 120.03898 * 180.02562 * 6 5 3 8 8 C 1.38903 * 119.91749 * 359.97438 * 6 5 3 9 9 O 1.35984 * 120.04476 * 179.97438 * 8 6 5 10 10 C 1.38183 * 119.95553 * 180.27853 * 2 1 3 11 11 C 1.50703 * 120.01050 * 359.74247 * 10 2 1 12 12 H 1.09004 * 109.46600 * 12.26524 * 11 10 2 13 13 N 1.46898 * 109.47181 * 132.26350 * 11 10 2 14 14 C 1.50697 * 109.47435 * 252.26747 * 11 10 2 15 15 H 1.08003 * 119.99638 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00068 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00568 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99815 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46912 * 120.00468 * 18 16 14 21 21 H 1.48496 * 109.47222 * 239.99730 * 18 16 14 22 22 H 1.08999 * 109.46988 * 263.88826 * 1 2 3 23 23 H 1.09001 * 109.46826 * 23.87707 * 1 2 3 24 24 H 1.08993 * 109.47553 * 143.88267 * 1 2 3 25 25 H 1.07989 * 119.99598 * 179.97438 * 5 3 2 26 26 H 0.96694 * 114.00286 * 270.01952 * 9 8 6 27 27 H 1.00905 * 111.00074 * 296.05089 * 13 11 10 28 28 H 1.00898 * 110.99589 * 60.00049 * 13 11 10 29 29 H 0.96990 * 120.00500 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1987 0.0000 4 17 1.3277 2.7007 0.0067 5 6 3.5816 1.2021 -0.0057 6 6 4.2764 0.0060 -0.0120 7 9 5.6274 0.0087 -0.0171 8 6 3.5834 -1.1978 -0.0120 9 8 4.2639 -2.3752 -0.0187 10 6 2.1970 -1.1972 -0.0058 11 6 1.4427 -2.5019 -0.0063 12 1 0.3906 -2.3132 -0.2200 13 7 2.0000 -3.3893 -1.0358 14 6 1.5711 -3.1570 1.3448 15 1 2.1423 -2.6767 2.1256 16 6 0.9596 -4.3692 1.5840 17 7 0.2638 -4.9538 0.6335 18 14 1.1195 -5.1816 3.2586 19 1 1.9475 -4.3265 4.1465 20 1 -0.2292 -5.3544 3.8557 21 1 1.7665 -6.5093 3.1050 22 1 -0.3633 -0.1094 1.0218 23 1 -0.3633 0.9397 -0.4160 24 1 -0.3634 -0.8301 -0.6057 25 1 4.1191 2.1387 -0.0061 26 1 4.4566 -2.7130 -0.9039 27 1 1.8679 -3.0013 -1.9578 28 1 2.9752 -3.5795 -0.8598 29 1 -0.1668 -5.8064 0.8019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060015.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = -85.014928 kcal Electronic energy + Delta-G solvation = -17522.997588 eV Core-core repulsion = 14385.960144 eV Total energy + Delta-G solvation = -3137.037444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.99945 -41.16535 -38.44798 -37.20638 -36.19585 -33.77522 -32.76300 -30.63283 -28.01931 -27.55678 -24.94257 -22.97017 -21.96440 -19.26345 -18.82993 -18.43376 -17.84001 -16.94326 -16.55803 -16.08072 -15.98389 -15.58982 -15.08659 -14.85289 -14.79862 -14.33139 -13.88072 -13.51192 -13.30331 -13.21802 -12.84880 -12.63155 -12.53512 -12.07699 -11.92617 -11.87995 -11.52189 -11.08166 -10.49213 -9.71678 -9.44759 -8.89036 -7.96607 -6.13438 -0.15826 0.02609 0.96635 1.41065 1.45016 1.54297 2.23110 2.50656 2.92648 3.21833 3.31654 3.67073 3.81614 4.05893 4.41407 4.48941 4.51744 4.71243 4.77458 4.84364 4.95605 5.21436 5.23814 5.53676 5.68328 5.79613 6.17273 6.62921 6.66680 7.12966 7.29499 7.56151 9.06839 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.007733 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.756093 B = 3619.791672 C = 4261.091609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.020 4.020 4 Cl -0.042 7.042 5 C -0.137 4.137 6 C 0.065 3.935 7 F -0.134 7.134 8 C 0.077 3.923 9 O -0.483 6.483 10 C -0.090 4.090 11 C 0.265 3.735 12 H 0.043 0.957 13 N -0.822 5.822 14 C -0.526 4.526 15 H 0.033 0.967 16 C 0.042 3.958 17 N -0.875 5.875 18 Si 0.938 3.062 19 H -0.279 1.279 20 H -0.278 1.278 21 H -0.284 1.284 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.170 0.830 26 H 0.396 0.604 27 H 0.311 0.689 28 H 0.328 0.672 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 12.568 -4.196 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.047 4.047 4 Cl -0.013 7.013 5 C -0.156 4.156 6 C 0.045 3.955 7 F -0.113 7.113 8 C 0.030 3.970 9 O -0.294 6.294 10 C -0.093 4.093 11 C 0.155 3.845 12 H 0.060 0.940 13 N -0.355 5.355 14 C -0.564 4.564 15 H 0.052 0.948 16 C -0.162 4.162 17 N -0.511 5.511 18 Si 0.765 3.235 19 H -0.204 1.204 20 H -0.204 1.204 21 H -0.210 1.210 22 H 0.093 0.907 23 H 0.107 0.893 24 H 0.089 0.911 25 H 0.188 0.812 26 H 0.255 0.745 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.040 12.029 -3.390 12.862 hybrid contribution 1.059 0.079 0.247 1.091 sum 4.099 12.109 -3.143 13.164 Atomic orbital electron populations 1.20878 0.89043 1.03663 1.03322 1.19818 0.98097 0.90140 0.99616 1.20461 0.91539 0.87293 1.05410 1.98342 1.76093 1.30070 1.96779 1.20893 0.92558 0.97897 1.04251 1.17903 0.77133 0.93708 1.06792 1.91469 1.28292 1.97326 1.94187 1.18445 0.89921 0.84770 1.03831 1.84969 1.75279 1.35149 1.33993 1.21663 0.93002 0.98707 0.95957 1.17960 0.92923 0.82193 0.91396 0.93968 1.59090 1.22759 1.50612 1.03074 1.20946 1.33094 1.05782 0.96621 0.94841 1.25475 0.94612 0.97432 0.98667 1.70180 1.32120 1.16236 1.32613 0.85849 0.77655 0.78420 0.81584 1.20377 1.20392 1.20965 0.90733 0.89271 0.91057 0.81215 0.74501 0.87743 0.85405 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.51 9.05 71.24 0.64 -2.87 15 2 C -0.07 -2.55 5.88 -19.85 -0.12 -2.67 15 3 C -0.02 -0.58 6.31 22.33 0.14 -0.44 15 4 Cl -0.04 -0.99 27.18 -2.72 -0.07 -1.07 15 5 C -0.14 -3.82 9.80 22.32 0.22 -3.60 15 6 C 0.06 2.11 7.31 22.45 0.16 2.27 15 7 F -0.13 -4.28 17.11 44.97 0.77 -3.51 15 8 C 0.08 2.84 6.46 22.53 0.15 2.98 15 9 O -0.48 -17.94 11.03 -93.37 -1.03 -18.97 15 10 C -0.09 -3.52 4.89 -19.78 -0.10 -3.62 15 11 C 0.27 12.31 2.54 43.42 0.11 12.42 15 12 H 0.04 2.11 5.57 -2.39 -0.01 2.10 15 13 N -0.82 -35.83 8.44 -174.95 -1.48 -37.30 15 14 C -0.53 -28.38 8.38 25.60 0.21 -28.16 15 15 H 0.03 1.90 7.74 -2.91 -0.02 1.88 15 16 C 0.04 2.29 5.39 84.65 0.46 2.74 15 17 N -0.88 -49.58 12.77 21.44 0.27 -49.30 15 18 Si 0.94 44.06 29.54 68.60 2.03 46.09 15 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 15 22 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 23 H 0.09 2.27 6.65 -2.39 -0.02 2.25 15 24 H 0.07 2.38 6.24 -2.39 -0.01 2.37 15 25 H 0.17 3.69 8.06 -2.92 -0.02 3.67 15 26 H 0.40 11.12 7.75 -74.06 -0.57 10.55 15 27 H 0.31 11.73 9.06 -89.69 -0.81 10.92 15 28 H 0.33 13.45 5.35 -89.70 -0.48 12.97 15 29 H 0.25 13.87 8.31 -92.72 -0.77 13.10 15 Total: -1.00 -61.46 266.27 1.74 -59.71 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.63 Total: 25.28 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 1.88 Total: -20.93 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -1.20 Total: -86.61 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.03 Total: -18.97 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.77 Total: -3.51 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.07 Total: -1.07 kcal Total: -61.46 1.74 -59.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060015.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.302 kcal (2) G-P(sol) polarization free energy of solvation -61.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds