Wall clock time and date at job start Mon Mar 30 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99811 * 2 1 4 4 H 1.48499 * 109.47024 * 264.91548 * 3 2 1 5 5 H 1.48500 * 109.47081 * 24.91697 * 3 2 1 6 6 H 1.48496 * 109.47058 * 144.92056 * 3 2 1 7 7 C 1.37875 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 352.40009 * 7 2 1 9 9 C 1.50694 * 120.00133 * 172.40058 * 7 2 1 10 10 H 1.09002 * 109.47243 * 5.18614 * 9 7 2 11 11 C 1.52994 * 109.47322 * 245.19152 * 9 7 2 12 12 N 1.46901 * 109.47311 * 64.84057 * 11 9 7 13 13 C 1.50700 * 109.47302 * 125.18798 * 9 7 2 14 14 C 1.38207 * 120.00760 * 60.00306 * 13 9 7 15 15 C 1.38417 * 120.05042 * 179.97438 * 14 13 9 16 16 F 1.35103 * 119.96565 * 179.97438 * 15 14 13 17 17 C 1.38484 * 120.06882 * 0.02562 * 15 14 13 18 18 C 1.38211 * 120.01913 * 0.02562 * 17 15 14 19 19 Cl 1.73601 * 120.02850 * 179.97438 * 18 17 15 20 20 C 1.38642 * 120.00998 * 240.00006 * 13 9 7 21 21 O 1.35968 * 120.03481 * 0.03887 * 20 13 9 22 22 H 0.96998 * 120.00107 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47715 * 184.84652 * 11 9 7 24 24 H 1.09003 * 109.47134 * 304.84223 * 11 9 7 25 25 H 1.00897 * 110.99922 * 64.33463 * 12 11 9 26 26 H 1.00902 * 110.99905 * 188.28523 * 12 11 9 27 27 H 1.08000 * 119.97113 * 0.25196 * 14 13 9 28 28 H 1.08002 * 119.98800 * 179.97438 * 17 15 14 29 29 H 0.96700 * 114.00298 * 269.98404 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6041 1.9844 -1.3946 5 1 1.3970 2.6813 0.5899 6 1 3.4889 1.4736 0.8046 7 6 2.0046 -1.1940 0.0005 8 1 1.4716 -2.1252 0.1247 9 6 3.5016 -1.1999 -0.1720 10 1 3.8693 -0.1739 -0.1897 11 6 3.8606 -1.8929 -1.4879 12 7 3.3394 -1.1062 -2.6138 13 6 4.1368 -1.9414 0.9759 14 6 3.8216 -3.2682 1.2006 15 6 4.4048 -3.9503 2.2543 16 9 4.0951 -5.2471 2.4727 17 6 5.3047 -3.3046 3.0856 18 6 5.6212 -1.9776 2.8642 19 17 6.7487 -1.1677 3.9065 20 6 5.0375 -1.2930 1.8068 21 8 5.3477 0.0125 1.5871 22 1 -0.4850 0.8400 0.0004 23 1 4.9444 -1.9739 -1.5722 24 1 3.4194 -2.8894 -1.5059 25 1 3.7858 -0.2026 -2.6608 26 1 3.4438 -1.6068 -3.4837 27 1 3.1231 -3.7743 0.5507 28 1 5.7588 -3.8380 3.9077 29 1 6.1019 0.1435 0.9962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067811.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:09 Heat of formation + Delta-G solvation = -71.964030 kcal Electronic energy + Delta-G solvation = -17361.248049 eV Core-core repulsion = 14224.776534 eV Total energy + Delta-G solvation = -3136.471515 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.64600 -39.63182 -36.49144 -36.24636 -35.15389 -32.25105 -31.27971 -29.11553 -27.69342 -24.23482 -23.00095 -22.06366 -19.75333 -18.21938 -17.33537 -17.02252 -16.23302 -15.49924 -15.10730 -14.93096 -14.54969 -14.35659 -13.58774 -13.55993 -13.31241 -12.77835 -12.50007 -12.33136 -12.05311 -11.57438 -11.11070 -10.96995 -10.88685 -10.79376 -10.32344 -9.94680 -9.66081 -9.19499 -8.53118 -8.38312 -8.11386 -7.78895 -6.04761 -4.02850 1.25235 1.41748 2.20382 3.36623 3.44944 3.53552 3.69617 4.38940 4.50830 4.55552 4.93316 5.20327 5.36133 5.42272 5.54250 5.74387 5.97255 6.07680 6.11735 6.30145 6.45565 6.56410 6.68435 7.00505 7.13361 7.61074 7.90339 7.95532 8.12697 8.45959 8.95137 9.57765 11.07540 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019127 B = 0.008631 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.575243 B = 3243.422525 C = 3862.887703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.086 3.914 3 Si 0.864 3.136 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.243 1.243 7 C -0.484 4.484 8 H 0.073 0.927 9 C 0.044 3.956 10 H 0.060 0.940 11 C 0.079 3.921 12 N -0.827 5.827 13 C -0.017 4.017 14 C -0.125 4.125 15 C 0.100 3.900 16 F -0.140 7.140 17 C -0.163 4.163 18 C -0.034 4.034 19 Cl -0.065 7.065 20 C 0.090 3.910 21 O -0.473 6.473 22 H 0.263 0.737 23 H -0.006 1.006 24 H 0.063 0.937 25 H 0.328 0.672 26 H 0.327 0.673 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.603 -3.812 1.728 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.117 4.117 3 Si 0.691 3.309 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.167 1.167 7 C -0.520 4.520 8 H 0.091 0.909 9 C 0.025 3.975 10 H 0.078 0.922 11 C -0.052 4.052 12 N -0.354 5.354 13 C -0.019 4.019 14 C -0.144 4.144 15 C 0.080 3.920 16 F -0.118 7.118 17 C -0.183 4.183 18 C -0.061 4.061 19 Cl -0.036 7.036 20 C 0.044 3.956 21 O -0.282 6.282 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 12.328 -3.610 2.589 13.104 hybrid contribution 1.653 0.632 -0.377 1.809 sum 13.980 -2.978 2.212 14.464 Atomic orbital electron populations 1.69894 1.06477 1.27052 1.49588 1.24951 0.94550 0.98878 0.93329 0.87030 0.81422 0.83538 0.78891 1.20153 1.22272 1.16673 1.20524 0.87146 0.94817 1.49546 0.90912 1.18388 0.97375 0.95048 0.86684 0.92186 1.21954 0.92890 0.97578 0.92819 1.58327 1.65763 1.06120 1.05238 1.20811 0.90988 0.92222 0.97846 1.21042 1.00783 0.94917 0.97689 1.17470 0.98501 0.78930 0.97067 1.91479 1.91892 1.34029 1.94432 1.20580 1.01895 0.93514 1.02264 1.20988 0.96900 0.92720 0.95486 1.98341 1.59890 1.79567 1.65846 1.18072 0.97844 0.84761 0.94956 1.85026 1.53341 1.19891 1.69911 0.92679 0.98752 0.91845 0.85997 0.86186 0.83798 0.84301 0.76535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.96 55.43 0.77 -26.20 15 2 C 0.09 2.41 5.47 -17.82 -0.10 2.31 15 3 Si 0.86 20.95 27.02 -169.99 -4.59 16.36 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.30 -7.43 7.11 56.52 0.40 -7.02 15 6 H -0.24 -5.63 5.72 56.52 0.32 -5.31 15 7 C -0.48 -12.77 8.23 -34.44 -0.28 -13.05 15 8 H 0.07 2.11 7.89 -52.48 -0.41 1.69 15 9 C 0.04 0.94 2.10 -92.93 -0.20 0.75 15 10 H 0.06 1.29 3.55 -51.93 -0.18 1.11 15 11 C 0.08 1.45 5.89 -3.83 -0.02 1.42 15 12 N -0.83 -14.97 9.30 -10.37 -0.10 -15.07 15 13 C -0.02 -0.32 4.78 -104.48 -0.50 -0.82 15 14 C -0.13 -2.27 8.79 -39.53 -0.35 -2.62 15 15 C 0.10 1.65 7.30 -39.42 -0.29 1.37 15 16 F -0.14 -2.25 17.27 2.25 0.04 -2.21 15 17 C -0.16 -2.49 9.80 -39.50 -0.39 -2.88 15 18 C -0.03 -0.54 6.33 -39.37 -0.25 -0.79 15 19 Cl -0.07 -0.93 28.50 -51.86 -1.48 -2.40 15 20 C 0.09 1.60 6.67 -39.21 -0.26 1.34 15 21 O -0.47 -8.14 10.77 -19.64 -0.21 -8.35 15 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 23 H -0.01 -0.09 8.14 -51.93 -0.42 -0.51 15 24 H 0.06 1.18 7.56 -51.93 -0.39 0.79 15 25 H 0.33 5.60 9.07 -39.29 -0.36 5.24 15 26 H 0.33 4.88 9.08 -39.29 -0.36 4.52 15 27 H 0.14 2.60 7.53 -52.49 -0.40 2.20 15 28 H 0.14 1.80 8.06 -52.49 -0.42 1.37 15 29 H 0.38 4.61 9.06 45.56 0.41 5.03 15 LS Contribution 270.38 15.07 4.07 4.07 Total: -1.00 -30.63 270.38 -5.87 -36.49 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -1.74 Total: 10.28 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -2.63 Total: -12.97 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.68 Total: -41.27 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.21 Total: -8.35 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.59 Total: 16.36 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.48 Total: -2.40 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.63 -5.87 -36.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067811.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.469 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds