Wall clock time and date at job start Mon Mar 30 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35953 * 116.99735 * 2 1 4 4 C 1.38945 * 120.06041 * 270.23193 * 3 2 1 5 5 F 1.35102 * 120.03506 * 0.02562 * 4 3 2 6 6 C 1.38295 * 119.92966 * 180.27488 * 4 3 2 7 7 C 1.38287 * 120.04554 * 359.77294 * 6 4 3 8 8 C 1.38333 * 120.10985 * 359.97224 * 7 6 4 9 9 Cl 1.73597 * 119.96418 * 179.97438 * 8 7 6 10 10 C 1.38328 * 120.06832 * 0.02562 * 8 7 6 11 11 C 1.50706 * 120.02012 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46792 * 343.97222 * 11 10 8 13 13 N 1.46900 * 109.46936 * 223.97607 * 11 10 8 14 14 C 1.50697 * 109.47204 * 103.97711 * 11 10 8 15 15 H 1.08000 * 120.00035 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00057 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99862 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99842 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.46614 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.46920 * 299.99595 * 18 16 14 21 21 H 1.48499 * 109.47307 * 59.99961 * 18 16 14 22 22 H 1.09000 * 109.47689 * 59.99568 * 1 2 3 23 23 H 1.09007 * 109.47161 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47307 * 299.99083 * 1 2 3 25 25 H 1.08001 * 119.97310 * 179.74962 * 6 4 3 26 26 H 1.07998 * 119.94410 * 179.97438 * 7 6 4 27 27 H 1.00900 * 111.00069 * 291.61687 * 13 11 10 28 28 H 1.00898 * 111.00336 * 55.57752 * 13 11 10 29 29 H 0.96995 * 120.00120 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 2.3577 1.8337 -1.2026 5 9 2.0473 1.2360 -2.3737 6 6 2.9906 3.0634 -1.1994 7 6 3.3089 3.6752 -0.0008 8 6 2.9948 3.0596 1.1975 9 17 3.3967 3.8308 2.6999 10 6 2.3617 1.8297 1.1998 11 6 2.0204 1.1598 2.5059 12 1 2.5834 1.6290 3.3128 13 7 2.3682 -0.2655 2.4306 14 6 0.5444 1.3032 2.7735 15 1 -0.0838 1.8275 2.0685 16 6 -0.0040 0.7661 3.9188 17 7 0.7610 0.1282 4.7775 18 14 -1.8337 0.9446 4.2507 19 1 -2.1698 0.2843 5.5377 20 1 -2.1847 2.3855 4.3265 21 1 -2.6009 0.3053 3.1517 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 3.2368 3.5459 -2.1338 26 1 3.8036 4.6353 -0.0003 27 1 1.7640 -0.7515 1.7850 28 1 3.3380 -0.3884 2.1808 29 1 1.7109 0.0352 4.6049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:15 Heat of formation + Delta-G solvation = -80.123954 kcal Electronic energy + Delta-G solvation = -17871.940246 eV Core-core repulsion = 14735.114890 eV Total energy + Delta-G solvation = -3136.825356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02845 -41.19667 -38.60442 -37.20733 -36.60799 -33.42779 -31.07542 -30.99871 -28.33146 -27.04912 -24.84461 -23.54045 -22.40074 -19.19890 -19.03431 -18.37426 -17.67613 -17.15719 -16.51996 -16.21777 -15.91900 -15.76228 -15.41907 -15.24897 -14.71675 -14.33924 -13.87127 -13.77930 -13.58807 -13.02456 -12.68853 -12.50209 -12.39926 -12.10795 -11.92939 -11.66491 -10.99714 -10.78716 -10.41512 -9.82332 -9.57907 -9.18956 -8.33478 -6.17950 -0.21309 0.00352 1.11884 1.56824 1.63082 1.81233 2.15417 2.64558 2.76595 3.04531 3.37978 3.63630 3.92172 4.06930 4.28924 4.38539 4.42235 4.59842 4.63320 4.80613 4.87961 5.00093 5.03391 5.43660 5.44561 5.91391 6.22792 6.36533 6.73062 6.85143 7.11494 7.70233 9.02998 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.010019 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.611039 B = 2793.914020 C = 3643.525925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.058 3.942 4 C 0.070 3.930 5 F -0.135 7.135 6 C -0.132 4.132 7 C -0.077 4.077 8 C -0.051 4.051 9 Cl -0.060 7.060 10 C -0.085 4.085 11 C 0.241 3.759 12 H 0.033 0.967 13 N -0.836 5.836 14 C -0.599 4.599 15 H 0.042 0.958 16 C -0.005 4.005 17 N -0.918 5.918 18 Si 1.098 2.902 19 H -0.290 1.290 20 H -0.277 1.277 21 H -0.269 1.269 22 H 0.046 0.954 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.185 0.815 26 H 0.178 0.822 27 H 0.341 0.659 28 H 0.308 0.692 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 6.660 -11.846 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.013 3.987 4 C 0.050 3.950 5 F -0.114 7.114 6 C -0.150 4.150 7 C -0.096 4.096 8 C -0.078 4.078 9 Cl -0.031 7.031 10 C -0.089 4.089 11 C 0.131 3.869 12 H 0.050 0.950 13 N -0.368 5.368 14 C -0.637 4.637 15 H 0.060 0.940 16 C -0.209 4.209 17 N -0.554 5.554 18 Si 0.921 3.079 19 H -0.216 1.216 20 H -0.203 1.203 21 H -0.194 1.194 22 H 0.065 0.935 23 H 0.125 0.875 24 H 0.085 0.915 25 H 0.202 0.798 26 H 0.195 0.805 27 H 0.159 0.841 28 H 0.118 0.882 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.941 6.090 -9.896 11.780 hybrid contribution 1.288 0.434 -1.890 2.328 sum 3.229 6.523 -11.785 13.852 Atomic orbital electron populations 1.23443 0.77515 1.04559 1.01912 1.85864 1.21654 1.23887 1.93745 1.18481 1.01021 0.88661 0.90579 1.18337 1.02767 0.93744 0.80139 1.91465 1.91224 1.83566 1.45127 1.21255 1.00137 0.92895 1.00744 1.21252 0.98707 1.01177 0.88441 1.20962 1.03621 0.94621 0.88613 1.98348 1.92167 1.79704 1.32900 1.21512 0.95119 0.93992 0.98279 1.18207 0.96546 0.85027 0.87131 0.94968 1.59407 1.05979 1.12726 1.58668 1.21727 0.92253 1.40749 1.09001 0.94027 1.26742 1.08864 0.92737 0.92563 1.70641 1.09055 1.38194 1.37470 0.83205 0.71344 0.76857 0.76452 1.21580 1.20309 1.19435 0.93507 0.87546 0.91501 0.79797 0.80504 0.84136 0.88157 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 10.60 113.37 1.20 1.89 15 2 O -0.34 -13.24 7.31 -93.02 -0.68 -13.92 15 3 C 0.06 2.21 5.52 22.53 0.12 2.34 15 4 C 0.07 2.24 7.31 22.45 0.16 2.40 15 5 F -0.14 -4.26 17.11 44.97 0.77 -3.49 15 6 C -0.13 -3.24 10.02 22.29 0.22 -3.02 15 7 C -0.08 -2.00 9.82 22.30 0.22 -1.78 15 8 C -0.05 -1.76 6.31 22.31 0.14 -1.62 15 9 Cl -0.06 -2.11 27.08 -2.72 -0.07 -2.18 15 10 C -0.09 -3.49 4.82 -19.75 -0.10 -3.58 15 11 C 0.24 11.61 2.17 43.42 0.09 11.70 15 12 H 0.03 1.71 6.26 -2.39 -0.01 1.69 15 13 N -0.84 -39.71 7.57 -174.94 -1.32 -41.04 15 14 C -0.60 -31.35 6.49 25.60 0.17 -31.18 15 15 H 0.04 2.18 6.50 -2.91 -0.02 2.16 15 16 C 0.00 -0.25 5.39 84.65 0.46 0.21 15 17 N -0.92 -54.79 13.51 21.45 0.29 -54.50 15 18 Si 1.10 48.72 29.90 68.60 2.05 50.77 15 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 22 H 0.05 1.48 8.14 -2.39 -0.02 1.47 15 23 H 0.11 3.33 8.14 -2.38 -0.02 3.32 15 24 H 0.07 2.79 4.57 -2.39 -0.01 2.78 15 25 H 0.18 2.95 8.06 -2.91 -0.02 2.92 15 26 H 0.18 3.20 8.06 -2.91 -0.02 3.17 15 27 H 0.34 16.15 5.95 -89.69 -0.53 15.62 15 28 H 0.31 13.43 8.98 -89.70 -0.81 12.63 15 29 H 0.28 17.05 6.39 -92.71 -0.59 16.45 15 Total: -1.00 -62.28 263.32 3.79 -58.49 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.06 Total: 28.52 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 2.70 Total: -22.65 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -1.03 Total: -95.54 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.68 Total: -13.92 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.77 Total: -3.49 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.05 Total: 50.77 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.18 kcal Total: -62.28 3.79 -58.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.632 kcal (2) G-P(sol) polarization free energy of solvation -62.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds