Wall clock time and date at job start Mon Mar 30 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35958 * 117.00016 * 2 1 4 4 C 1.38948 * 120.05157 * 269.97131 * 3 2 1 5 5 F 1.35101 * 120.03584 * 0.04545 * 4 3 2 6 6 C 1.38283 * 119.93019 * 180.02562 * 4 3 2 7 7 C 1.38292 * 120.04142 * 359.97438 * 6 4 3 8 8 C 1.38324 * 120.11247 * 359.77221 * 7 6 4 9 9 Cl 1.73601 * 119.96938 * 180.27291 * 8 7 6 10 10 C 1.38334 * 120.06797 * 0.50594 * 8 7 6 11 11 C 1.50701 * 120.02243 * 179.74582 * 10 8 7 12 12 H 1.08996 * 109.47386 * 190.88449 * 11 10 8 13 13 N 1.46902 * 109.47144 * 310.88908 * 11 10 8 14 14 C 1.50701 * 109.47188 * 70.88550 * 11 10 8 15 15 H 1.07999 * 120.00182 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00142 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00024 * 179.97438 * 16 14 11 18 18 Si 1.86797 * 119.99983 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.47057 * 89.99987 * 18 16 14 20 20 H 1.48504 * 109.47092 * 330.00245 * 18 16 14 21 21 H 1.48496 * 109.47336 * 210.00115 * 18 16 14 22 22 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47865 * 300.00566 * 1 2 3 24 24 H 1.09001 * 109.47058 * 60.00735 * 1 2 3 25 25 H 1.07998 * 119.98165 * 179.97438 * 6 4 3 26 26 H 1.07997 * 119.94120 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00436 * 75.58673 * 13 11 10 28 28 H 1.00898 * 110.99930 * 199.54754 * 13 11 10 29 29 H 0.96999 * 119.99988 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.3626 1.8311 -1.2027 5 9 2.0565 1.2310 -2.3737 6 6 2.9909 3.0630 -1.1998 7 6 3.3035 3.6778 -0.0012 8 6 2.9846 3.0649 1.1971 9 17 3.3724 3.8434 2.6996 10 6 2.3613 1.8300 1.1996 11 6 2.0194 1.1605 2.5058 12 1 1.7174 0.1302 2.3179 13 7 3.1961 1.1732 3.3852 14 6 0.8882 1.9025 3.1696 15 1 0.4593 2.7717 2.6932 16 6 0.4007 1.4718 4.3853 17 7 -0.5862 2.1197 4.9648 18 14 1.1419 -0.0319 5.2090 19 1 2.2631 0.3873 6.0880 20 1 1.6489 -0.9654 4.1713 21 1 0.1032 -0.7132 6.0227 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 3.2376 3.5452 -2.1341 26 1 3.7938 4.6401 -0.0008 27 1 3.3440 2.0907 3.7782 28 1 3.1121 0.4779 4.1115 29 1 -0.9295 1.8164 5.8199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079919.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:18 Heat of formation + Delta-G solvation = -52.945421 kcal Electronic energy + Delta-G solvation = -17748.341205 eV Core-core repulsion = 14612.694399 eV Total energy + Delta-G solvation = -3135.646806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.63600 -39.62341 -37.20751 -35.73218 -34.93263 -31.94987 -29.93998 -29.50683 -26.69825 -25.95620 -23.41356 -22.14244 -20.41908 -17.64415 -17.46759 -16.63632 -16.54316 -15.74516 -15.13694 -15.01436 -14.57995 -14.42741 -14.12715 -13.42754 -13.07387 -12.65736 -12.57522 -12.23433 -12.14766 -11.51872 -11.26117 -11.22646 -10.74083 -10.62960 -10.31500 -9.96951 -9.63865 -9.40445 -8.81205 -8.44005 -8.09164 -7.56160 -6.27819 -4.30565 1.23012 1.44682 2.66959 3.11504 3.23932 3.25189 3.56409 4.15503 4.19884 4.45755 4.90965 5.05329 5.25794 5.43496 5.63179 5.69671 5.84329 5.93755 6.07208 6.16306 6.19453 6.36696 6.50332 6.76062 7.04421 7.37860 7.78021 8.06318 8.22507 8.53711 8.76874 9.30714 10.84213 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.010006 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.306919 B = 2797.734677 C = 3607.793598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.069 3.931 4 C 0.078 3.922 5 F -0.137 7.137 6 C -0.153 4.153 7 C -0.095 4.095 8 C -0.017 4.017 9 Cl -0.040 7.040 10 C -0.002 4.002 11 C 0.207 3.793 12 H 0.061 0.939 13 N -0.856 5.856 14 C -0.538 4.538 15 H 0.078 0.922 16 C 0.079 3.921 17 N -0.886 5.886 18 Si 0.865 3.135 19 H -0.274 1.274 20 H -0.260 1.260 21 H -0.290 1.290 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.342 0.658 28 H 0.315 0.685 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 1.027 -8.747 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.023 3.977 4 C 0.058 3.942 5 F -0.115 7.115 6 C -0.173 4.173 7 C -0.114 4.114 8 C -0.045 4.045 9 Cl -0.011 7.011 10 C -0.004 4.004 11 C 0.097 3.903 12 H 0.078 0.922 13 N -0.396 5.396 14 C -0.577 4.577 15 H 0.096 0.904 16 C -0.125 4.125 17 N -0.523 5.523 18 Si 0.694 3.306 19 H -0.200 1.200 20 H -0.184 1.184 21 H -0.217 1.217 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.158 0.842 26 H 0.157 0.843 27 H 0.162 0.838 28 H 0.130 0.870 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.827 0.717 -9.126 10.851 hybrid contribution -0.633 -0.385 1.197 1.408 sum 5.194 0.333 -7.928 9.484 Atomic orbital electron populations 1.23122 0.78387 1.03187 1.01727 1.86000 1.20431 1.23540 1.94074 1.18305 1.01125 0.88088 0.90156 1.18063 1.02624 0.92835 0.80699 1.91455 1.91294 1.83301 1.45482 1.20751 1.02987 0.94390 0.99123 1.20830 1.00304 1.00356 0.89869 1.20533 1.02147 0.94292 0.87494 1.98305 1.92374 1.78656 1.31723 1.20257 0.92351 0.91701 0.96074 1.18420 0.88624 0.96926 0.86294 0.92163 1.59774 1.42766 1.11800 1.25273 1.21422 1.17002 1.14276 1.05020 0.90403 1.24914 0.94558 0.96128 0.96870 1.69875 1.25572 1.39607 1.17198 0.87124 0.78994 0.84202 0.80290 1.20024 1.18450 1.21661 0.89060 0.91138 0.94153 0.84173 0.84339 0.83805 0.86959 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.13 101.05 1.12 1.63 15 2 O -0.32 -6.40 9.09 -19.61 -0.18 -6.58 15 3 C 0.07 1.36 5.70 -39.19 -0.22 1.14 15 4 C 0.08 1.34 7.31 -39.30 -0.29 1.05 15 5 F -0.14 -2.30 17.11 2.25 0.04 -2.26 15 6 C -0.15 -2.24 10.02 -39.54 -0.40 -2.64 15 7 C -0.09 -1.44 9.82 -39.53 -0.39 -1.83 15 8 C -0.02 -0.33 6.14 -39.51 -0.24 -0.57 15 9 Cl -0.04 -0.74 24.19 -51.86 -1.25 -2.00 15 10 C 0.00 -0.04 4.91 -104.45 -0.51 -0.55 15 11 C 0.21 4.83 2.28 -70.01 -0.16 4.67 15 12 H 0.06 1.48 6.13 -51.93 -0.32 1.16 15 13 N -0.86 -19.18 8.47 -6.65 -0.06 -19.24 15 14 C -0.54 -14.08 8.18 -34.44 -0.28 -14.36 15 15 H 0.08 2.24 7.98 -52.49 -0.42 1.82 15 16 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 17 N -0.89 -25.51 13.96 55.43 0.77 -24.74 15 18 Si 0.87 20.42 24.64 -169.99 -4.19 16.23 15 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 20 H -0.26 -5.98 6.44 56.52 0.36 -5.61 15 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 22 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.14 1.57 8.06 -52.49 -0.42 1.15 15 26 H 0.14 1.67 8.06 -52.49 -0.42 1.25 15 27 H 0.34 7.52 5.30 -39.29 -0.21 7.32 15 28 H 0.32 7.04 4.98 -39.29 -0.20 6.85 15 29 H 0.27 7.25 8.31 -40.82 -0.34 6.92 15 LS Contribution 262.31 15.07 3.95 3.95 Total: -1.00 -28.80 262.31 -4.80 -33.61 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -2.43 Total: 10.44 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.46 Total: -9.41 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.72 Total: -43.98 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.18 Total: -6.58 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.19 Total: 16.23 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.25 Total: -2.00 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.80 -4.80 -33.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079919.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.340 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds