Wall clock time and date at job start Mon Mar 30 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35958 * 117.00016 * 2 1 4 4 C 1.38948 * 120.05157 * 269.97131 * 3 2 1 5 5 F 1.35101 * 120.03584 * 0.04545 * 4 3 2 6 6 C 1.38283 * 119.93019 * 180.02562 * 4 3 2 7 7 C 1.38292 * 120.04142 * 359.97438 * 6 4 3 8 8 C 1.38324 * 120.11247 * 359.77221 * 7 6 4 9 9 Cl 1.73601 * 119.96938 * 180.27291 * 8 7 6 10 10 C 1.38334 * 120.06797 * 0.50594 * 8 7 6 11 11 C 1.50701 * 120.02243 * 179.74582 * 10 8 7 12 12 H 1.08996 * 109.47386 * 190.88449 * 11 10 8 13 13 N 1.46902 * 109.47144 * 310.88908 * 11 10 8 14 14 C 1.50701 * 109.47188 * 70.88550 * 11 10 8 15 15 H 1.07999 * 120.00182 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00142 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00024 * 179.97438 * 16 14 11 18 18 Si 1.86797 * 119.99983 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.47057 * 89.99987 * 18 16 14 20 20 H 1.48504 * 109.47092 * 330.00245 * 18 16 14 21 21 H 1.48496 * 109.47336 * 210.00115 * 18 16 14 22 22 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47865 * 300.00566 * 1 2 3 24 24 H 1.09001 * 109.47058 * 60.00735 * 1 2 3 25 25 H 1.07998 * 119.98165 * 179.97438 * 6 4 3 26 26 H 1.07997 * 119.94120 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00436 * 75.58673 * 13 11 10 28 28 H 1.00898 * 110.99930 * 199.54754 * 13 11 10 29 29 H 0.96999 * 119.99988 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.3626 1.8311 -1.2027 5 9 2.0565 1.2310 -2.3737 6 6 2.9909 3.0630 -1.1998 7 6 3.3035 3.6778 -0.0012 8 6 2.9846 3.0649 1.1971 9 17 3.3724 3.8434 2.6996 10 6 2.3613 1.8300 1.1996 11 6 2.0194 1.1605 2.5058 12 1 1.7174 0.1302 2.3179 13 7 3.1961 1.1732 3.3852 14 6 0.8882 1.9025 3.1696 15 1 0.4593 2.7717 2.6932 16 6 0.4007 1.4718 4.3853 17 7 -0.5862 2.1197 4.9648 18 14 1.1419 -0.0319 5.2090 19 1 2.2631 0.3873 6.0880 20 1 1.6489 -0.9654 4.1713 21 1 0.1032 -0.7132 6.0227 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 3.2376 3.5452 -2.1341 26 1 3.7938 4.6401 -0.0008 27 1 3.3440 2.0907 3.7782 28 1 3.1121 0.4779 4.1115 29 1 -0.9295 1.8164 5.8199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079919.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:18 Heat of formation + Delta-G solvation = -72.924027 kcal Electronic energy + Delta-G solvation = -17749.207542 eV Core-core repulsion = 14612.694399 eV Total energy + Delta-G solvation = -3136.513143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.95564 -41.05808 -38.63438 -37.16605 -36.70974 -33.95883 -31.41717 -30.88587 -28.32916 -27.63764 -25.04761 -23.52214 -22.05247 -19.35113 -19.01505 -18.20157 -18.03119 -17.14999 -16.85619 -16.38248 -16.29971 -15.91018 -15.51350 -15.18460 -14.51892 -14.36068 -14.10338 -13.75401 -13.55440 -13.21194 -13.04328 -12.74053 -12.46105 -12.09729 -12.02453 -11.78281 -11.22036 -11.02947 -10.87216 -9.88466 -9.48534 -9.37680 -8.37806 -6.43046 -0.12993 0.07998 1.22099 1.24476 1.30210 1.36880 2.20431 2.21636 2.77469 2.94704 3.10725 3.63883 3.96991 4.07123 4.23630 4.32648 4.42273 4.52049 4.60448 4.70775 4.82800 4.94976 5.09616 5.28900 5.42673 5.50412 6.03833 6.33658 6.38037 6.59248 6.72754 7.20746 8.77458 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.010006 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.306919 B = 2797.734677 C = 3607.793598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.341 6.341 3 C 0.050 3.950 4 C 0.073 3.927 5 F -0.134 7.134 6 C -0.128 4.128 7 C -0.081 4.081 8 C -0.033 4.033 9 Cl -0.047 7.047 10 C -0.039 4.039 11 C 0.216 3.784 12 H 0.045 0.955 13 N -0.849 5.849 14 C -0.524 4.524 15 H 0.041 0.959 16 C 0.029 3.971 17 N -0.930 5.930 18 Si 0.919 3.081 19 H -0.259 1.259 20 H -0.252 1.252 21 H -0.291 1.291 22 H 0.118 0.882 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.187 0.813 26 H 0.178 0.822 27 H 0.345 0.655 28 H 0.315 0.685 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 1.228 -10.361 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.258 6.258 3 C 0.005 3.995 4 C 0.053 3.947 5 F -0.112 7.112 6 C -0.146 4.146 7 C -0.100 4.100 8 C -0.061 4.061 9 Cl -0.018 7.018 10 C -0.041 4.041 11 C 0.106 3.894 12 H 0.063 0.937 13 N -0.390 5.390 14 C -0.564 4.564 15 H 0.059 0.941 16 C -0.170 4.170 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.184 1.184 20 H -0.176 1.176 21 H -0.218 1.218 22 H 0.136 0.864 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.204 0.796 26 H 0.195 0.805 27 H 0.165 0.835 28 H 0.130 0.870 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.348 0.921 -10.752 13.055 hybrid contribution -1.114 -0.377 1.568 1.961 sum 6.234 0.544 -9.183 11.112 Atomic orbital electron populations 1.23211 0.77377 1.04762 1.00968 1.85961 1.21533 1.24133 1.94173 1.18516 1.01759 0.88390 0.90879 1.18176 1.02924 0.93634 0.79956 1.91465 1.91318 1.83456 1.44973 1.21256 0.99937 0.92733 1.00703 1.21257 0.98912 1.01345 0.88449 1.20804 1.02738 0.93981 0.88537 1.98294 1.92412 1.78502 1.32635 1.20119 0.95345 0.93290 0.95324 1.18149 0.87795 0.95825 0.87672 0.93722 1.59782 1.41976 1.12004 1.25205 1.21480 1.17286 1.12934 1.04671 0.94058 1.25617 0.94967 0.98794 0.97666 1.70003 1.27418 1.41607 1.17899 0.86237 0.78597 0.81050 0.79575 1.18444 1.17645 1.21782 0.86405 0.94148 0.92560 0.79581 0.80471 0.83510 0.87020 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.13 113.37 1.26 2.29 15 2 O -0.34 -13.39 9.09 -93.07 -0.85 -14.23 15 3 C 0.05 1.93 5.70 22.53 0.13 2.06 15 4 C 0.07 2.34 7.31 22.45 0.16 2.50 15 5 F -0.13 -4.13 17.11 44.97 0.77 -3.36 15 6 C -0.13 -3.18 10.02 22.29 0.22 -2.96 15 7 C -0.08 -2.18 9.82 22.30 0.22 -1.96 15 8 C -0.03 -1.21 6.14 22.31 0.14 -1.07 15 9 Cl -0.05 -1.74 24.19 -2.72 -0.07 -1.81 15 10 C -0.04 -1.62 4.91 -19.76 -0.10 -1.72 15 11 C 0.22 10.15 2.28 43.42 0.10 10.25 15 12 H 0.04 2.23 6.13 -2.39 -0.01 2.21 15 13 N -0.85 -37.67 8.47 -174.95 -1.48 -39.15 15 14 C -0.52 -28.17 8.18 25.60 0.21 -27.96 15 15 H 0.04 2.48 7.98 -2.91 -0.02 2.45 15 16 C 0.03 1.63 5.47 84.65 0.46 2.09 15 17 N -0.93 -55.07 13.96 21.45 0.30 -54.77 15 18 Si 0.92 42.37 24.64 68.60 1.69 44.06 15 19 H -0.26 -11.26 7.11 99.48 0.71 -10.56 15 20 H -0.25 -11.21 6.44 99.48 0.64 -10.57 15 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 15 22 H 0.12 3.22 8.14 -2.39 -0.02 3.20 15 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.19 2.97 8.06 -2.91 -0.02 2.95 15 26 H 0.18 3.38 8.06 -2.91 -0.02 3.36 15 27 H 0.34 15.02 5.30 -89.69 -0.48 14.54 15 28 H 0.31 13.75 4.98 -89.70 -0.45 13.30 15 29 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 Total: -1.00 -63.57 262.31 3.39 -60.18 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.22 Total: 25.57 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 2.81 Total: -16.48 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -1.18 Total: -93.93 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.85 Total: -14.23 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.77 Total: -3.36 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.69 Total: 44.06 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -63.57 3.39 -60.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079919.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.742 kcal (2) G-P(sol) polarization free energy of solvation -63.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds