Wall clock time and date at job start Mon Mar 30 2020 06:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35922 * 116.99728 * 2 1 4 4 C 1.38808 * 120.04856 * 270.24974 * 3 2 1 5 5 Cl 1.73598 * 120.04453 * 359.97438 * 4 3 2 6 6 C 1.38421 * 119.90272 * 180.25502 * 4 3 2 7 7 F 1.35094 * 120.00130 * 179.77237 * 6 4 3 8 8 C 1.38509 * 119.99753 * 359.74891 * 6 4 3 9 9 C 1.38214 * 120.09065 * 0.02562 * 8 6 4 10 10 C 1.38201 * 120.09520 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99267 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47210 * 144.99946 * 11 10 9 13 13 N 1.46899 * 109.47483 * 24.99615 * 11 10 9 14 14 C 1.50702 * 109.46869 * 264.99652 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46827 * 299.99809 * 1 2 3 24 24 H 1.08996 * 109.47139 * 60.00314 * 1 2 3 25 25 H 1.07993 * 119.95550 * 179.97438 * 8 6 4 26 26 H 1.07999 * 119.95346 * 179.97438 * 9 8 6 27 27 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 28 28 H 1.00904 * 110.99882 * 63.95460 * 13 11 10 29 29 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3569 1.8328 -1.2015 5 17 1.9587 1.0642 -2.7063 6 6 2.9900 3.0637 -1.1980 7 9 3.2976 3.6684 -2.3662 8 6 3.3077 3.6756 0.0033 9 6 2.9939 3.0586 1.1996 10 6 2.3618 1.8296 1.2005 11 6 2.0212 1.1586 2.5062 12 1 1.0801 0.6184 2.4025 13 7 1.8893 2.1745 3.5591 14 6 3.1171 0.1922 2.8751 15 1 3.9747 0.0758 2.2290 16 6 3.0280 -0.5389 4.0408 17 7 1.9840 -0.3969 4.8278 18 14 4.3901 -1.7311 4.5019 19 1 5.4452 -1.7053 3.4572 20 1 4.9762 -1.3323 5.8068 21 1 3.8320 -3.1032 4.6085 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.8020 4.6358 0.0052 26 1 3.2430 3.5375 2.1349 27 1 2.7493 2.6894 3.6746 28 1 1.1185 2.7966 3.3668 29 1 1.9211 -0.9116 5.6477 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:30 Heat of formation + Delta-G solvation = -74.609882 kcal Electronic energy + Delta-G solvation = -17407.270725 eV Core-core repulsion = 14270.684477 eV Total energy + Delta-G solvation = -3136.586248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02041 -41.15484 -38.28780 -37.73347 -36.19605 -33.60982 -31.40409 -30.51037 -28.15417 -27.69497 -24.85909 -23.63542 -21.97851 -19.37360 -18.58100 -18.20398 -17.29409 -17.03513 -16.82009 -16.34984 -16.17035 -16.01962 -15.58529 -15.24117 -14.49899 -14.11337 -13.79794 -13.72976 -13.23140 -13.03603 -12.76624 -12.69713 -12.53051 -12.29510 -12.05959 -11.73994 -11.24655 -10.99347 -10.51997 -9.80314 -9.50662 -8.93251 -7.96157 -6.14776 -0.13133 -0.00823 0.91024 1.42927 1.46567 1.55963 2.23999 2.50281 2.64842 3.21871 3.28299 3.74356 3.84127 4.14862 4.28971 4.37712 4.44147 4.47042 4.67250 4.74173 4.87117 5.09838 5.16144 5.56660 5.58829 5.78675 6.18930 6.45122 6.66919 7.11722 7.28183 7.55982 9.07120 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.024833 B = 0.007143 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.257140 B = 3918.803526 C = 4247.784748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.335 6.335 3 C 0.120 3.880 4 C -0.105 4.105 5 Cl -0.046 7.046 6 C 0.092 3.908 7 F -0.130 7.130 8 C -0.130 4.130 9 C -0.082 4.082 10 C -0.113 4.113 11 C 0.271 3.729 12 H 0.025 0.975 13 N -0.820 5.820 14 C -0.532 4.532 15 H 0.038 0.962 16 C 0.042 3.958 17 N -0.876 5.876 18 Si 0.940 3.060 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.283 1.283 22 H 0.110 0.890 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.179 0.821 26 H 0.156 0.844 27 H 0.328 0.672 28 H 0.316 0.684 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 7.481 -10.176 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.252 6.252 3 C 0.075 3.925 4 C -0.134 4.134 5 Cl -0.017 7.017 6 C 0.072 3.928 7 F -0.108 7.108 8 C -0.148 4.148 9 C -0.101 4.101 10 C -0.116 4.116 11 C 0.160 3.840 12 H 0.043 0.957 13 N -0.348 5.348 14 C -0.570 4.570 15 H 0.057 0.943 16 C -0.162 4.162 17 N -0.512 5.512 18 Si 0.767 3.233 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.209 1.209 22 H 0.128 0.872 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.196 0.804 26 H 0.173 0.827 27 H 0.142 0.858 28 H 0.128 0.872 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.288 6.577 -9.675 11.770 hybrid contribution 0.650 -0.104 -0.803 1.038 sum -0.638 6.473 -10.478 12.333 Atomic orbital electron populations 1.23105 0.77442 1.04603 1.00581 1.86065 1.21286 1.23772 1.94052 1.18176 0.97853 0.86637 0.89852 1.21523 1.08204 0.95323 0.88321 1.98335 1.92632 1.81044 1.29738 1.17238 1.01885 0.90989 0.82723 1.91501 1.91070 1.82370 1.45878 1.21378 1.01942 1.02465 0.89021 1.21083 0.96121 0.93755 0.99109 1.22059 0.97253 0.94825 0.97472 1.17706 0.95867 0.89359 0.81026 0.95741 1.58931 1.07626 1.18497 1.49785 1.20977 1.06006 1.23448 1.06598 0.94321 1.25510 0.97084 0.97338 0.96257 1.70198 1.29108 1.39811 1.12087 0.85808 0.80236 0.79314 0.77930 1.20037 1.20512 1.20945 0.87161 0.93971 0.92440 0.80413 0.82657 0.85805 0.87221 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.14 10.80 113.37 1.22 2.37 15 2 O -0.34 -13.39 9.15 -92.67 -0.85 -14.23 15 3 C 0.12 4.62 5.69 22.51 0.13 4.75 15 4 C -0.11 -3.59 6.34 22.45 0.14 -3.45 15 5 Cl -0.05 -1.44 28.16 -2.72 -0.08 -1.51 15 6 C 0.09 2.78 7.27 22.38 0.16 2.94 15 7 F -0.13 -3.73 16.83 44.97 0.76 -2.98 15 8 C -0.13 -3.44 10.02 22.33 0.22 -3.22 15 9 C -0.08 -2.56 9.26 22.26 0.21 -2.35 15 10 C -0.11 -4.39 5.00 -19.77 -0.10 -4.48 15 11 C 0.27 12.60 2.57 43.42 0.11 12.71 15 12 H 0.02 1.29 6.43 -2.38 -0.02 1.28 15 13 N -0.82 -34.76 8.12 -174.95 -1.42 -36.18 15 14 C -0.53 -28.46 8.71 25.60 0.22 -28.23 15 15 H 0.04 2.14 7.74 -2.91 -0.02 2.12 15 16 C 0.04 2.28 5.39 84.66 0.46 2.73 15 17 N -0.88 -49.56 12.76 21.45 0.27 -49.29 15 18 Si 0.94 43.52 29.54 68.60 2.03 45.55 15 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 22 H 0.11 3.02 8.14 -2.38 -0.02 3.00 15 23 H 0.04 1.38 7.17 -2.39 -0.02 1.37 15 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.18 3.32 8.06 -2.91 -0.02 3.29 15 26 H 0.16 4.23 6.28 -2.91 -0.02 4.21 15 27 H 0.33 12.75 7.20 -89.69 -0.65 12.10 15 28 H 0.32 11.58 9.06 -89.69 -0.81 10.77 15 29 H 0.25 13.84 8.31 -92.70 -0.77 13.07 15 Total: -1.00 -61.53 273.48 3.25 -58.28 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.24 Total: 16.59 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 2.78 Total: -16.23 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.15 Total: -85.47 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.85 Total: -14.23 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.76 Total: -2.98 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.51 kcal Total: -61.53 3.25 -58.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.328 kcal (2) G-P(sol) polarization free energy of solvation -61.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds