Wall clock time and date at job start Mon Mar 30 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35927 * 116.99682 * 2 1 4 4 C 1.38793 * 120.04810 * 269.97924 * 3 2 1 5 5 Cl 1.73598 * 120.05070 * 0.04116 * 4 3 2 6 6 C 1.38434 * 119.90264 * 180.02562 * 4 3 2 7 7 F 1.35100 * 120.00302 * 180.02562 * 6 4 3 8 8 C 1.38505 * 119.99260 * 359.97438 * 6 4 3 9 9 C 1.38208 * 120.09356 * 359.74728 * 8 6 4 10 10 C 1.38193 * 120.10011 * 0.50934 * 9 8 6 11 11 C 1.50694 * 120.00010 * 179.76411 * 10 9 8 12 12 H 1.09004 * 109.47470 * 219.72347 * 11 10 9 13 13 N 1.46897 * 109.47522 * 339.72490 * 11 10 9 14 14 C 1.50706 * 109.47260 * 99.72720 * 11 10 9 15 15 H 1.08002 * 119.99604 * 335.25229 * 14 11 10 16 16 C 1.37879 * 120.00014 * 155.25455 * 14 11 10 17 17 N 1.31507 * 120.00312 * 6.88977 * 16 14 11 18 18 Si 1.86795 * 119.99535 * 186.88692 * 16 14 11 19 19 H 1.48502 * 109.47336 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47326 * 300.00100 * 18 16 14 21 21 H 1.48505 * 109.47492 * 60.00124 * 18 16 14 22 22 H 1.09005 * 109.47734 * 299.99671 * 1 2 3 23 23 H 1.08999 * 109.47403 * 60.00090 * 1 2 3 24 24 H 1.09006 * 109.47073 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.95107 * 180.02562 * 8 6 4 26 26 H 1.08006 * 119.95183 * 180.27368 * 9 8 6 27 27 H 1.00905 * 110.99840 * 66.71133 * 13 11 10 28 28 H 1.00899 * 111.00679 * 190.66601 * 13 11 10 29 29 H 0.97004 * 119.99762 * 355.32476 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3619 1.8302 -1.2014 5 17 1.9685 1.0593 -2.7063 6 6 2.9907 3.0634 -1.1979 7 9 3.2987 3.6681 -2.3661 8 6 3.3033 3.6778 0.0034 9 6 2.9834 3.0638 1.1996 10 6 2.3604 1.8303 1.2007 11 6 2.0175 1.1605 2.5063 12 1 2.2134 0.0910 2.4285 13 7 2.8401 1.7320 3.5808 14 6 0.5597 1.3827 2.8173 15 1 0.0431 2.2357 2.4026 16 6 -0.1143 0.4971 3.6312 17 7 0.5426 -0.4628 4.2447 18 14 -1.9606 0.6611 3.8625 19 1 -2.4413 -0.4043 4.7786 20 1 -2.2703 1.9913 4.4455 21 1 -2.6381 0.5270 2.5479 22 1 -0.3635 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.7935 4.6402 0.0054 26 1 3.2242 3.5470 2.1351 27 1 2.5984 2.6975 3.7466 28 1 2.7584 1.1884 4.4269 29 1 1.4886 -0.5901 4.0722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124625.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:33 Heat of formation + Delta-G solvation = -84.464040 kcal Electronic energy + Delta-G solvation = -17596.277352 eV Core-core repulsion = 14459.263796 eV Total energy + Delta-G solvation = -3137.013556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.01433 -41.14236 -38.22832 -37.76960 -36.66057 -33.51394 -31.38173 -30.74187 -28.21615 -27.13946 -24.91371 -23.67519 -22.17883 -19.41824 -19.06161 -18.31637 -17.34943 -17.07278 -16.94799 -16.37307 -16.05353 -15.67523 -15.50244 -14.93174 -14.62516 -14.30747 -13.96914 -13.79327 -13.61787 -13.05978 -12.68816 -12.50914 -12.35851 -12.16209 -12.01621 -11.65939 -11.41561 -10.93879 -10.68482 -9.79637 -9.65329 -9.23378 -8.54085 -6.37197 -0.11081 -0.00543 0.90367 1.53939 1.56645 1.76611 2.22335 2.52929 2.72898 3.15501 3.24179 3.66239 3.82021 4.18318 4.29085 4.35634 4.40807 4.59478 4.63151 4.80778 4.95406 5.05385 5.19698 5.51444 5.60734 5.83621 6.09170 6.42227 6.54205 6.54715 6.85504 7.39912 8.74183 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.007904 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.705301 B = 3541.554112 C = 4141.825463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.106 4.106 5 Cl -0.047 7.047 6 C 0.092 3.908 7 F -0.129 7.129 8 C -0.133 4.133 9 C -0.068 4.068 10 C -0.068 4.068 11 C 0.235 3.765 12 H 0.024 0.976 13 N -0.842 5.842 14 C -0.615 4.615 15 H 0.043 0.957 16 C -0.005 4.005 17 N -0.924 5.924 18 Si 1.096 2.904 19 H -0.289 1.289 20 H -0.274 1.274 21 H -0.268 1.268 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.179 0.821 26 H 0.158 0.842 27 H 0.333 0.667 28 H 0.329 0.671 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 6.929 -8.363 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.255 6.255 3 C 0.069 3.931 4 C -0.134 4.134 5 Cl -0.018 7.018 6 C 0.072 3.928 7 F -0.108 7.108 8 C -0.151 4.151 9 C -0.087 4.087 10 C -0.070 4.070 11 C 0.125 3.875 12 H 0.042 0.958 13 N -0.370 5.370 14 C -0.654 4.654 15 H 0.062 0.938 16 C -0.207 4.207 17 N -0.561 5.561 18 Si 0.919 3.081 19 H -0.214 1.214 20 H -0.199 1.199 21 H -0.193 1.193 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.117 0.883 25 H 0.197 0.803 26 H 0.176 0.824 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.153 5.908 -8.231 10.197 hybrid contribution 0.249 0.485 -0.641 0.841 sum 1.402 6.393 -8.872 11.025 Atomic orbital electron populations 1.23238 0.77437 1.03953 1.01726 1.85890 1.21454 1.24001 1.94169 1.18142 0.97819 0.87117 0.89974 1.21414 1.08434 0.95364 0.88173 1.98331 1.92840 1.80950 1.29676 1.17227 1.01978 0.90854 0.82741 1.91500 1.91064 1.82354 1.45863 1.21419 1.02261 1.02456 0.89012 1.21063 0.95357 0.93279 0.98969 1.20704 0.96161 0.95210 0.94896 1.17767 0.90863 0.93090 0.85761 0.95820 1.59458 1.59664 1.06788 1.11041 1.22488 0.96431 1.12247 1.34262 0.93846 1.26861 1.09073 0.92518 0.92266 1.70931 1.11573 1.34064 1.39486 0.83205 0.70995 0.76572 0.77340 1.21446 1.19921 1.19328 0.91903 0.93249 0.88296 0.80337 0.82418 0.85535 0.85949 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 11.02 113.37 1.25 2.39 15 2 O -0.34 -14.36 9.11 -92.72 -0.84 -15.21 15 3 C 0.11 4.63 5.68 22.51 0.13 4.76 15 4 C -0.11 -3.77 6.34 22.45 0.14 -3.62 15 5 Cl -0.05 -1.52 28.16 -2.72 -0.08 -1.60 15 6 C 0.09 2.91 7.27 22.38 0.16 3.07 15 7 F -0.13 -3.84 16.84 44.97 0.76 -3.09 15 8 C -0.13 -3.70 10.02 22.33 0.22 -3.48 15 9 C -0.07 -2.24 9.27 22.25 0.21 -2.03 15 10 C -0.07 -2.76 5.08 -19.77 -0.10 -2.86 15 11 C 0.23 10.76 2.22 43.42 0.10 10.85 15 12 H 0.02 1.28 6.73 -2.39 -0.02 1.26 15 13 N -0.84 -34.35 8.53 -174.96 -1.49 -35.84 15 14 C -0.61 -29.92 6.01 25.60 0.15 -29.76 15 15 H 0.04 2.15 7.81 -2.91 -0.02 2.12 15 16 C -0.01 -0.26 5.35 84.66 0.45 0.19 15 17 N -0.92 -50.76 13.63 21.45 0.29 -50.47 15 18 Si 1.10 45.46 29.91 68.60 2.05 47.51 15 19 H -0.29 -12.35 7.11 99.48 0.71 -11.64 15 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 21 H -0.27 -10.30 7.11 99.48 0.71 -9.60 15 22 H 0.06 2.68 5.42 -2.38 -0.01 2.67 15 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.10 3.39 8.14 -2.38 -0.02 3.37 15 25 H 0.18 3.51 8.06 -2.91 -0.02 3.49 15 26 H 0.16 4.60 6.42 -2.91 -0.02 4.58 15 27 H 0.33 12.35 7.62 -89.69 -0.68 11.67 15 28 H 0.33 14.25 8.48 -89.69 -0.76 13.49 15 29 H 0.26 14.62 6.24 -92.71 -0.58 14.04 15 Total: -1.00 -55.48 268.80 3.37 -52.11 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.03 Total: 27.08 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 2.72 Total: -20.49 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -1.20 Total: -86.32 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.84 Total: -15.21 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.76 Total: -3.09 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.05 Total: 47.51 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -55.48 3.37 -52.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124625.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.355 kcal (2) G-P(sol) polarization free energy of solvation -55.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds