Wall clock time and date at job start Mon Mar 30 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99661 * 2 1 4 4 H 1.48501 * 109.46571 * 239.99720 * 3 2 1 5 5 H 1.48499 * 109.47366 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46947 * 120.00066 * 3 2 1 7 7 C 1.37868 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00486 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.46924 * 305.00290 * 10 9 7 12 12 N 1.46896 * 109.47284 * 65.00207 * 10 9 7 13 13 C 1.50703 * 109.47237 * 185.00329 * 10 9 7 14 14 C 1.38254 * 119.95282 * 265.00049 * 13 10 9 15 15 C 1.38151 * 120.09876 * 179.97438 * 14 13 10 16 16 C 1.38734 * 120.00340 * 359.97438 * 15 14 13 17 17 O 1.35923 * 120.04601 * 179.97438 * 16 15 14 18 18 C 1.38765 * 119.90740 * 0.02562 * 16 15 14 19 19 Cl 1.73604 * 120.04463 * 179.72470 * 18 16 15 20 20 C 1.38461 * 119.95345 * 84.99737 * 13 10 9 21 21 F 1.35101 * 120.00538 * 0.02796 * 20 13 10 22 22 H 0.97002 * 120.00281 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46734 * 60.00194 * 9 7 2 24 24 H 1.08997 * 109.47113 * 300.00463 * 9 7 2 25 25 H 1.00901 * 111.00177 * 296.05005 * 12 10 9 26 26 H 1.00899 * 111.00015 * 59.99790 * 12 10 9 27 27 H 1.08000 * 119.94650 * 0.02562 * 14 13 10 28 28 H 1.07994 * 120.00081 * 180.02562 * 15 14 13 29 29 H 0.96708 * 113.99931 * 270.01945 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 1 2.9295 -3.5558 -0.8392 12 7 3.0084 -3.6527 1.2579 13 6 1.4960 -4.9637 -0.1200 14 6 1.1640 -5.6788 1.0157 15 6 0.4766 -6.8723 0.9067 16 6 0.1180 -7.3546 -0.3437 17 8 -0.5579 -8.5289 -0.4520 18 6 0.4511 -6.6370 -1.4837 19 17 0.0104 -7.2408 -3.0506 20 6 1.1409 -5.4419 -1.3700 21 9 1.4668 -4.7419 -2.4787 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5574 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 3.5700 -2.8179 1.3335 26 1 2.3961 -3.7498 2.0540 27 1 1.4417 -5.3035 1.9895 28 1 0.2177 -7.4293 1.7949 29 1 0.0130 -9.3051 -0.5345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260150782.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:34 Heat of formation + Delta-G solvation = -100.237832 kcal Electronic energy + Delta-G solvation = -16976.820967 eV Core-core repulsion = 13839.123408 eV Total energy + Delta-G solvation = -3137.697559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.04187 -40.87414 -38.57329 -37.62752 -36.38492 -34.45695 -31.59785 -30.56274 -29.91693 -26.34230 -24.08306 -23.87460 -21.59433 -19.87607 -18.83591 -18.23664 -17.62435 -17.12763 -16.90837 -16.56657 -16.14370 -15.74042 -15.10708 -14.87435 -14.59756 -14.30004 -14.15323 -13.60941 -13.37974 -13.05813 -12.86728 -12.60469 -12.43847 -12.21465 -12.19059 -11.83989 -11.73526 -11.24821 -10.62981 -9.80795 -9.76967 -9.34744 -8.23693 -6.36385 -0.11878 -0.05170 0.90630 1.39509 1.42017 1.49551 2.29476 2.38713 2.76538 3.09730 3.36283 3.50926 3.83193 4.00324 4.07624 4.30727 4.57375 4.74829 4.79489 4.87716 5.06684 5.23090 5.34028 5.48068 5.60654 5.71592 6.11165 6.30745 6.68061 6.70184 6.79099 7.33897 8.87398 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.031103 B = 0.005530 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.026743 B = 5062.296804 C = 5479.330996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.012 3.988 10 C 0.142 3.858 11 H 0.066 0.934 12 N -0.821 5.821 13 C -0.107 4.107 14 C -0.058 4.058 15 C -0.127 4.127 16 C 0.140 3.860 17 O -0.485 6.485 18 C -0.115 4.115 19 Cl -0.046 7.046 20 C 0.097 3.903 21 F -0.139 7.139 22 H 0.263 0.737 23 H -0.020 1.020 24 H 0.001 0.999 25 H 0.350 0.650 26 H 0.340 0.660 27 H 0.162 0.838 28 H 0.181 0.819 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -16.353 2.262 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.027 4.027 10 C 0.030 3.970 11 H 0.084 0.916 12 N -0.351 5.351 13 C -0.108 4.108 14 C -0.076 4.076 15 C -0.146 4.146 16 C 0.094 3.906 17 O -0.298 6.298 18 C -0.144 4.144 19 Cl -0.017 7.017 20 C 0.077 3.923 21 F -0.118 7.118 22 H 0.072 0.928 23 H -0.002 1.002 24 H 0.019 0.981 25 H 0.163 0.837 26 H 0.153 0.847 27 H 0.180 0.820 28 H 0.198 0.802 29 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.125 -16.597 1.831 16.832 hybrid contribution -0.126 1.844 -0.721 1.984 sum 1.999 -14.753 1.109 14.929 Atomic orbital electron populations 1.70104 1.07922 1.27870 1.51158 1.25947 0.95638 1.03335 0.94554 0.85505 0.78201 0.78089 0.79276 1.19674 1.21331 1.18444 1.21499 0.93543 0.91538 1.51092 0.91426 1.19643 0.94495 0.93420 0.95094 1.20047 0.93550 0.89230 0.94176 0.91555 1.59258 1.27133 1.45852 1.02848 1.20189 1.00876 0.98041 0.91714 1.21099 0.94789 0.93269 0.98480 1.21739 0.98181 0.97198 0.97447 1.17901 0.93907 0.89111 0.89692 1.84809 1.35268 1.14505 1.95257 1.21519 1.06509 0.97275 0.89051 1.98351 1.91624 1.87011 1.24685 1.17376 1.00866 0.90919 0.83155 1.91488 1.90649 1.78277 1.51348 0.92808 1.00155 0.98089 0.83664 0.84669 0.82013 0.80161 0.72418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.44 0.28 -55.73 15 2 C 0.00 0.21 5.46 84.65 0.46 0.67 15 3 Si 0.96 43.29 29.54 68.60 2.03 45.32 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 15 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 7 C -0.54 -29.19 8.55 25.60 0.22 -28.97 15 8 H 0.07 3.44 7.15 -2.91 -0.02 3.42 15 9 C 0.01 0.62 4.60 29.85 0.14 0.76 15 10 C 0.14 5.75 2.76 44.17 0.12 5.87 15 11 H 0.07 2.90 7.79 -2.38 -0.02 2.88 15 12 N -0.82 -27.61 8.79 -171.80 -1.51 -29.12 15 13 C -0.11 -3.77 5.06 -19.81 -0.10 -3.87 15 14 C -0.06 -1.57 9.26 22.25 0.21 -1.37 15 15 C -0.13 -2.78 9.98 22.37 0.22 -2.56 15 16 C 0.14 3.44 6.70 22.51 0.15 3.59 15 17 O -0.48 -9.29 12.96 -92.69 -1.20 -10.49 15 18 C -0.12 -3.54 6.34 22.45 0.14 -3.40 15 19 Cl -0.05 -1.31 28.16 -2.72 -0.08 -1.39 15 20 C 0.10 3.56 7.21 22.38 0.16 3.72 15 21 F -0.14 -5.73 16.13 44.97 0.73 -5.00 15 22 H 0.26 15.01 8.31 -92.71 -0.77 14.24 15 23 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 15 24 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 25 H 0.35 12.12 7.90 -89.69 -0.71 11.41 15 26 H 0.34 10.27 7.20 -89.69 -0.65 9.63 15 27 H 0.16 3.71 6.28 -2.91 -0.02 3.69 15 28 H 0.18 2.52 8.06 -2.91 -0.02 2.50 15 29 H 0.42 3.66 9.06 -74.05 -0.67 2.99 15 Total: -1.00 -67.16 274.16 1.18 -65.99 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.80 Total: 16.00 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 1.72 Total: -25.56 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -1.23 Total: -84.85 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.20 Total: -10.49 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.73 Total: -5.00 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -67.16 1.18 -65.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260150782.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.252 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds