Wall clock time and date at job start Mon Mar 30 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47636 * 269.99977 * 3 2 1 5 5 H 1.48508 * 109.46992 * 30.00384 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00043 * 3 2 1 7 7 C 1.37882 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46840 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46988 * 304.99249 * 10 9 7 12 12 N 1.46905 * 109.47116 * 64.99774 * 10 9 7 13 13 C 1.50698 * 109.47015 * 184.99527 * 10 9 7 14 14 C 1.38657 * 120.02117 * 287.05724 * 13 10 9 15 15 O 1.35955 * 120.05546 * 359.97438 * 14 13 10 16 16 C 1.38909 * 119.88487 * 179.97438 * 14 13 10 17 17 F 1.35098 * 120.03239 * 179.97438 * 16 14 13 18 18 C 1.38330 * 119.93154 * 359.97438 * 16 14 13 19 19 C 1.38241 * 120.04482 * 0.27750 * 18 16 14 20 20 C 1.38286 * 120.02269 * 107.02713 * 13 10 9 21 21 Cl 1.73601 * 119.96533 * 0.05265 * 20 13 10 22 22 H 0.96997 * 119.99536 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47755 * 59.99553 * 9 7 2 24 24 H 1.09001 * 109.46422 * 299.99426 * 9 7 2 25 25 H 1.00902 * 110.99478 * 290.90602 * 12 10 9 26 26 H 1.00899 * 110.99891 * 54.86027 * 12 10 9 27 27 H 0.96698 * 114.00221 * 269.98186 * 15 14 13 28 28 H 1.08002 * 119.97535 * 179.97438 * 18 16 14 29 29 H 1.08003 * 119.94576 * 179.72383 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9293 -3.5546 -0.8445 12 7 3.0084 -3.6550 1.2525 13 6 1.4959 -4.9636 -0.1276 14 6 0.7703 -5.4523 0.9482 15 8 0.7345 -4.7585 2.1168 16 6 0.0802 -6.6520 0.8298 17 9 -0.6273 -7.1312 1.8762 18 6 0.1180 -7.3555 -0.3607 19 6 0.8466 -6.8682 -1.4297 20 6 1.5309 -5.6710 -1.3154 21 17 2.4397 -5.0596 -2.6622 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5564 -0.8918 24 1 0.6241 -2.5575 0.8881 25 1 3.6325 -2.8631 1.2917 26 1 2.3915 -3.6692 2.0508 27 1 1.4372 -4.9961 2.7370 28 1 -0.4179 -8.2885 -0.4534 29 1 0.8787 -7.4210 -2.3570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154133.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:16 Heat of formation + Delta-G solvation = -76.246259 kcal Electronic energy + Delta-G solvation = -17262.574741 eV Core-core repulsion = 14125.917535 eV Total energy + Delta-G solvation = -3136.657206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.79604 -39.83645 -36.99102 -35.94424 -35.26588 -32.45559 -30.14781 -29.44824 -27.93884 -24.70531 -22.71061 -22.33532 -20.22666 -18.29261 -17.53157 -16.57486 -16.32979 -16.07230 -15.38661 -14.64218 -14.60629 -14.28011 -13.92699 -13.38971 -13.02130 -12.74466 -12.53019 -12.39012 -11.91461 -11.74951 -11.16168 -10.96088 -10.83808 -10.61852 -10.53356 -9.98171 -9.92767 -9.14885 -8.67859 -8.43725 -8.37394 -7.82050 -6.05937 -4.10526 1.02159 1.18586 2.29425 3.27881 3.34611 3.36291 3.42199 4.07563 4.39431 4.41858 4.73595 4.92371 5.19794 5.29537 5.58581 5.64187 5.84791 5.96223 6.03873 6.13281 6.54258 6.66439 6.70604 7.44114 7.64252 7.74394 7.87598 7.95946 8.17091 8.30182 8.95616 9.53953 11.04818 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.006988 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.062048 B = 4005.801226 C = 4707.798612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.004 3.996 10 C 0.123 3.877 11 H 0.090 0.910 12 N -0.843 5.843 13 C -0.037 4.037 14 C 0.098 3.902 15 O -0.471 6.471 16 C 0.074 3.926 17 F -0.133 7.133 18 C -0.146 4.146 19 C -0.092 4.092 20 C -0.033 4.033 21 Cl -0.054 7.054 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.030 0.970 25 H 0.349 0.651 26 H 0.333 0.667 27 H 0.389 0.611 28 H 0.143 0.857 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -13.967 -0.559 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.034 4.034 10 C 0.012 3.988 11 H 0.108 0.892 12 N -0.376 5.376 13 C -0.039 4.039 14 C 0.052 3.948 15 O -0.281 6.281 16 C 0.054 3.946 17 F -0.112 7.112 18 C -0.165 4.165 19 C -0.111 4.111 20 C -0.061 4.061 21 Cl -0.025 7.025 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.162 0.838 26 H 0.148 0.852 27 H 0.247 0.753 28 H 0.161 0.839 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.443 -14.230 -1.109 14.481 hybrid contribution 0.123 1.656 0.409 1.710 sum 2.566 -12.574 -0.700 12.852 Atomic orbital electron populations 1.69981 1.06089 1.26705 1.49974 1.24997 0.94800 0.99222 0.95085 0.86592 0.79791 0.83456 0.78140 1.20653 1.21250 1.19816 1.21094 0.92764 0.90689 1.51699 0.92602 1.19770 0.94269 0.91008 0.98375 1.20648 0.95275 0.89160 0.93739 0.89213 1.59395 1.23867 1.50170 1.04189 1.20339 0.95462 0.97186 0.90949 1.17986 0.98416 0.90037 0.88395 1.84966 1.55115 1.62486 1.25508 1.18149 0.97092 0.93574 0.85744 1.91482 1.76144 1.87683 1.55895 1.20837 1.02597 1.01506 0.91554 1.20807 0.96440 0.94625 0.99246 1.20633 0.99819 0.95720 0.89911 1.98365 1.72965 1.87511 1.43645 0.92904 0.96449 0.95152 0.83782 0.85197 0.75297 0.83893 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.52 -14.21 8.62 -34.44 -0.30 -14.50 15 8 H 0.06 1.45 7.17 -52.49 -0.38 1.07 15 9 C 0.00 0.10 4.44 -27.88 -0.12 -0.02 15 10 C 0.12 2.49 2.68 -68.86 -0.18 2.31 15 11 H 0.09 1.86 6.32 -51.93 -0.33 1.53 15 12 N -0.84 -15.13 8.98 -5.65 -0.05 -15.18 15 13 C -0.04 -0.68 4.96 -104.45 -0.52 -1.19 15 14 C 0.10 1.69 6.47 -39.18 -0.25 1.44 15 15 O -0.47 -7.96 10.37 -19.60 -0.20 -8.17 15 16 C 0.07 1.14 7.31 -39.30 -0.29 0.85 15 17 F -0.13 -2.05 17.11 2.25 0.04 -2.01 15 18 C -0.15 -1.86 10.02 -39.55 -0.40 -2.25 15 19 C -0.09 -1.20 9.82 -39.53 -0.39 -1.59 15 20 C -0.03 -0.53 6.31 -39.51 -0.25 -0.78 15 21 Cl -0.05 -0.84 27.05 -51.86 -1.40 -2.25 15 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.03 0.84 7.36 -51.93 -0.38 0.46 15 25 H 0.35 6.39 8.07 -39.29 -0.32 6.07 15 26 H 0.33 5.70 5.56 -39.29 -0.22 5.48 15 27 H 0.39 4.85 7.90 45.56 0.36 5.21 15 28 H 0.14 1.37 8.06 -52.49 -0.42 0.95 15 29 H 0.14 1.41 8.06 -52.48 -0.42 0.98 15 LS Contribution 268.69 15.07 4.05 4.05 Total: -1.00 -30.66 268.69 -6.31 -36.97 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -1.67 Total: 10.25 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.80 Total: -14.13 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.69 Total: -41.00 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.20 Total: -8.17 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.40 Total: -2.25 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.66 -6.31 -36.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154133.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.273 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds