Wall clock time and date at job start Mon Mar 30 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47636 * 269.99977 * 3 2 1 5 5 H 1.48508 * 109.46992 * 30.00384 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00043 * 3 2 1 7 7 C 1.37882 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46840 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46988 * 304.99249 * 10 9 7 12 12 N 1.46905 * 109.47116 * 64.99774 * 10 9 7 13 13 C 1.50698 * 109.47015 * 184.99527 * 10 9 7 14 14 C 1.38657 * 120.02117 * 287.05724 * 13 10 9 15 15 O 1.35955 * 120.05546 * 359.97438 * 14 13 10 16 16 C 1.38909 * 119.88487 * 179.97438 * 14 13 10 17 17 F 1.35098 * 120.03239 * 179.97438 * 16 14 13 18 18 C 1.38330 * 119.93154 * 359.97438 * 16 14 13 19 19 C 1.38241 * 120.04482 * 0.27750 * 18 16 14 20 20 C 1.38286 * 120.02269 * 107.02713 * 13 10 9 21 21 Cl 1.73601 * 119.96533 * 0.05265 * 20 13 10 22 22 H 0.96997 * 119.99536 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47755 * 59.99553 * 9 7 2 24 24 H 1.09001 * 109.46422 * 299.99426 * 9 7 2 25 25 H 1.00902 * 110.99478 * 290.90602 * 12 10 9 26 26 H 1.00899 * 110.99891 * 54.86027 * 12 10 9 27 27 H 0.96698 * 114.00221 * 269.98186 * 15 14 13 28 28 H 1.08002 * 119.97535 * 179.97438 * 18 16 14 29 29 H 1.08003 * 119.94576 * 179.72383 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9293 -3.5546 -0.8445 12 7 3.0084 -3.6550 1.2525 13 6 1.4959 -4.9636 -0.1276 14 6 0.7703 -5.4523 0.9482 15 8 0.7345 -4.7585 2.1168 16 6 0.0802 -6.6520 0.8298 17 9 -0.6273 -7.1312 1.8762 18 6 0.1180 -7.3555 -0.3607 19 6 0.8466 -6.8682 -1.4297 20 6 1.5309 -5.6710 -1.3154 21 17 2.4397 -5.0596 -2.6622 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5564 -0.8918 24 1 0.6241 -2.5575 0.8881 25 1 3.6325 -2.8631 1.2917 26 1 2.3915 -3.6692 2.0508 27 1 1.4372 -4.9961 2.7370 28 1 -0.4179 -8.2885 -0.4534 29 1 0.8787 -7.4210 -2.3570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154133.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:16 Heat of formation + Delta-G solvation = -98.277839 kcal Electronic energy + Delta-G solvation = -17263.530102 eV Core-core repulsion = 14125.917535 eV Total energy + Delta-G solvation = -3137.612567 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.97822 -41.10866 -38.22712 -37.18467 -36.88455 -34.48613 -31.43122 -30.63203 -29.87992 -26.40926 -24.19070 -23.67588 -21.80341 -19.54520 -19.02342 -18.18477 -17.78660 -17.29242 -16.67633 -16.55580 -16.04319 -15.52573 -15.29608 -14.84386 -14.37289 -14.29581 -13.99931 -13.94185 -13.58543 -13.16429 -12.91814 -12.72515 -12.33969 -12.12245 -11.92898 -11.81066 -11.60573 -11.03349 -10.60604 -9.94150 -9.59182 -9.39171 -8.21315 -6.33505 -0.16438 0.00475 1.08023 1.39364 1.39981 1.50761 2.24709 2.39169 2.90380 3.12188 3.22509 3.54127 3.76454 4.06644 4.18308 4.44601 4.56808 4.61442 4.87159 4.91449 4.95936 5.12818 5.36224 5.51706 5.62367 5.76886 6.14687 6.31966 6.60773 6.68003 6.82834 7.36168 8.90267 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.006988 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.062048 B = 4005.801226 C = 4707.798612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.017 3.983 10 C 0.137 3.863 11 H 0.084 0.916 12 N -0.828 5.828 13 C -0.070 4.070 14 C 0.083 3.917 15 O -0.490 6.490 16 C 0.064 3.936 17 F -0.135 7.135 18 C -0.123 4.123 19 C -0.080 4.080 20 C -0.043 4.043 21 Cl -0.056 7.056 22 H 0.262 0.738 23 H -0.021 1.021 24 H -0.001 1.001 25 H 0.346 0.654 26 H 0.338 0.662 27 H 0.404 0.596 28 H 0.185 0.815 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.484 -15.284 -1.019 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.572 4.572 8 H 0.084 0.916 9 C -0.022 4.022 10 C 0.026 3.974 11 H 0.102 0.898 12 N -0.361 5.361 13 C -0.072 4.072 14 C 0.036 3.964 15 O -0.302 6.302 16 C 0.044 3.956 17 F -0.114 7.114 18 C -0.142 4.142 19 C -0.099 4.099 20 C -0.071 4.071 21 Cl -0.027 7.027 22 H 0.071 0.929 23 H -0.002 1.002 24 H 0.017 0.983 25 H 0.160 0.840 26 H 0.154 0.846 27 H 0.264 0.736 28 H 0.202 0.798 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.214 -15.568 -1.555 15.972 hybrid contribution -0.147 1.974 0.555 2.055 sum 3.067 -13.594 -1.000 13.972 Atomic orbital electron populations 1.70132 1.07986 1.27644 1.51475 1.25945 0.95592 1.03291 0.94702 0.85465 0.78828 0.78530 0.78327 1.20131 1.21230 1.18168 1.21519 0.93421 0.91565 1.50653 0.91553 1.19575 0.94435 0.93202 0.94943 1.20279 0.93948 0.88840 0.94370 0.89813 1.59385 1.23383 1.49691 1.03657 1.20184 0.97270 0.97110 0.92614 1.18171 0.99078 0.90939 0.88184 1.84913 1.56066 1.63200 1.26021 1.18307 0.97174 0.93378 0.86747 1.91479 1.76133 1.87545 1.56196 1.21312 1.01011 1.02056 0.89801 1.21230 0.94645 0.93266 1.00726 1.20889 1.00328 0.96707 0.89147 1.98361 1.73105 1.87769 1.43486 0.92937 1.00245 0.98268 0.84046 0.84633 0.73604 0.79765 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 15 2 C 0.00 0.16 5.46 84.66 0.46 0.62 15 3 Si 0.96 43.90 29.54 68.60 2.03 45.93 15 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 15 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.53 -29.39 8.62 25.60 0.22 -29.17 15 8 H 0.07 3.43 7.17 -2.91 -0.02 3.41 15 9 C 0.02 0.89 4.44 29.85 0.13 1.03 15 10 C 0.14 5.67 2.68 44.17 0.12 5.79 15 11 H 0.08 3.51 6.32 -2.39 -0.02 3.50 15 12 N -0.83 -29.86 8.98 -171.79 -1.54 -31.40 15 13 C -0.07 -2.53 4.96 -19.75 -0.10 -2.62 15 14 C 0.08 2.83 6.47 22.53 0.15 2.97 15 15 O -0.49 -16.88 10.37 -93.04 -0.96 -17.85 15 16 C 0.06 1.85 7.31 22.45 0.16 2.01 15 17 F -0.13 -3.92 17.11 44.97 0.77 -3.15 15 18 C -0.12 -2.69 10.02 22.29 0.22 -2.47 15 19 C -0.08 -1.82 9.82 22.30 0.22 -1.60 15 20 C -0.04 -1.33 6.31 22.31 0.14 -1.19 15 21 Cl -0.06 -1.71 27.05 -2.72 -0.07 -1.78 15 22 H 0.26 15.18 8.31 -92.71 -0.77 14.41 15 23 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 15 24 H 0.00 -0.06 7.36 -2.39 -0.02 -0.08 15 25 H 0.35 12.64 8.07 -89.69 -0.72 11.92 15 26 H 0.34 11.72 5.56 -89.70 -0.50 11.22 15 27 H 0.40 10.23 7.90 -74.06 -0.59 9.64 15 28 H 0.19 2.52 8.06 -2.91 -0.02 2.50 15 29 H 0.18 2.70 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -67.65 268.69 1.65 -65.99 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.58 Total: 23.84 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 1.73 Total: -24.64 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -1.26 Total: -88.34 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.96 Total: -17.85 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.77 Total: -3.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -67.65 1.65 -65.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154133.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.284 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds