Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35963 * 117.00362 * 2 1 4 4 C 1.38912 * 120.05612 * 270.25326 * 3 2 1 5 5 F 1.35102 * 120.04993 * 359.97438 * 4 3 2 6 6 C 1.38395 * 119.89328 * 180.29546 * 4 3 2 7 7 Cl 1.73603 * 119.99421 * 179.72106 * 6 4 3 8 8 C 1.38401 * 120.00653 * 359.70382 * 6 4 3 9 9 C 1.38207 * 120.11362 * 0.02562 * 8 6 4 10 10 C 1.38223 * 120.10361 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00078 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47210 * 145.00077 * 11 10 9 13 13 N 1.46899 * 109.47483 * 24.99747 * 11 10 9 14 14 C 1.50702 * 109.46869 * 264.99784 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09004 * 109.46912 * 300.00510 * 1 2 3 23 23 H 1.09003 * 109.46983 * 59.99643 * 1 2 3 24 24 H 1.08997 * 109.47281 * 180.02562 * 1 2 3 25 25 H 1.08004 * 119.94401 * 180.02562 * 8 6 4 26 26 H 1.08004 * 119.94691 * 179.97438 * 9 8 6 27 27 H 1.00902 * 111.00292 * 176.04974 * 13 11 10 28 28 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 29 29 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3574 1.8337 -1.2023 5 9 2.0476 1.2359 -2.3736 6 6 2.9913 3.0639 -1.1984 7 17 3.3879 3.8406 -2.6995 8 6 3.3088 3.6752 0.0020 9 6 2.9943 3.0589 1.1984 10 6 2.3612 1.8302 1.1999 11 6 2.0199 1.1600 2.5059 12 1 1.0784 0.6204 2.4022 13 7 1.8884 2.1764 3.5583 14 6 3.1150 0.1929 2.8754 15 1 3.9726 0.0757 2.2295 16 6 3.0251 -0.5376 4.0414 17 7 1.9810 -0.3946 4.8281 18 14 4.3863 -1.7306 4.5032 19 1 5.4416 -1.7060 3.4588 20 1 4.9724 -1.3317 5.8081 21 1 3.8272 -3.1022 4.6104 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.8031 4.6355 0.0039 26 1 3.2436 3.5381 2.1337 27 1 1.5968 1.7592 4.4295 28 1 2.7488 2.6907 3.6738 29 1 1.9176 -0.9088 5.6482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260163349.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = -82.560195 kcal Electronic energy + Delta-G solvation = -17413.936431 eV Core-core repulsion = 14277.005432 eV Total energy + Delta-G solvation = -3136.930999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.01811 -40.99629 -38.58860 -37.56854 -36.38165 -33.51579 -31.25565 -30.65987 -28.17018 -27.71633 -25.03011 -23.56999 -21.98029 -19.15405 -18.65674 -18.27287 -17.94706 -17.16328 -16.75808 -16.29320 -16.07323 -15.87106 -15.51108 -14.84643 -14.39227 -14.17221 -13.95165 -13.69921 -13.26931 -13.14673 -12.85547 -12.80449 -12.58011 -12.25589 -12.02090 -11.79402 -11.63205 -10.98755 -10.70988 -9.72325 -9.59532 -9.20596 -8.13484 -6.36014 -0.04113 -0.00590 0.91643 1.36102 1.40736 1.50833 2.27188 2.41677 2.75761 3.00908 3.10173 3.74848 3.91998 4.19918 4.32180 4.39982 4.46254 4.57402 4.68328 4.80433 4.86796 5.04983 5.26502 5.57059 5.65066 5.71671 6.01050 6.44286 6.62708 6.88163 7.11051 7.38449 8.82125 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.026505 B = 0.006635 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.145856 B = 4219.233030 C = 4477.665936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.340 6.340 3 C 0.054 3.946 4 C 0.071 3.929 5 F -0.132 7.132 6 C -0.080 4.080 7 Cl -0.044 7.044 8 C -0.075 4.075 9 C -0.096 4.096 10 C -0.041 4.041 11 C 0.250 3.750 12 H 0.025 0.975 13 N -0.841 5.841 14 C -0.548 4.548 15 H 0.041 0.959 16 C 0.028 3.972 17 N -0.912 5.912 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.274 1.274 21 H -0.283 1.283 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.112 0.888 25 H 0.178 0.822 26 H 0.157 0.843 27 H 0.349 0.651 28 H 0.323 0.677 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 7.541 -8.706 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.256 6.256 3 C 0.009 3.991 4 C 0.050 3.950 5 F -0.111 7.111 6 C -0.108 4.108 7 Cl -0.015 7.015 8 C -0.093 4.093 9 C -0.115 4.115 10 C -0.043 4.043 11 C 0.140 3.860 12 H 0.043 0.957 13 N -0.371 5.371 14 C -0.588 4.588 15 H 0.059 0.941 16 C -0.172 4.172 17 N -0.552 5.552 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.200 1.200 21 H -0.208 1.208 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.130 0.870 25 H 0.196 0.804 26 H 0.175 0.825 27 H 0.165 0.835 28 H 0.133 0.867 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.047 7.658 -9.186 11.959 hybrid contribution 1.027 -1.544 0.474 1.914 sum 0.980 6.114 -8.712 10.688 Atomic orbital electron populations 1.23145 0.77675 1.04587 1.00622 1.86084 1.21406 1.24036 1.94113 1.18523 1.01782 0.88140 0.90655 1.17833 1.03771 0.92399 0.80960 1.91456 1.91201 1.83317 1.45085 1.20800 1.06270 0.93789 0.89944 1.98351 1.92573 1.79629 1.30984 1.21284 0.98394 1.01232 0.88374 1.21145 0.97359 0.93771 0.99178 1.20779 0.94605 0.93920 0.94966 1.17644 0.94882 0.88233 0.85234 0.95723 1.59543 1.35742 1.28915 1.12864 1.21861 1.06261 1.24416 1.06254 0.94077 1.25593 0.97675 0.97710 0.96232 1.69811 1.29396 1.42490 1.13483 0.85569 0.79496 0.78894 0.77999 1.20127 1.19957 1.20844 0.93982 0.92509 0.87008 0.80440 0.82548 0.83545 0.86651 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 10.80 113.37 1.22 2.35 15 2 O -0.34 -14.46 9.56 -93.14 -0.89 -15.35 15 3 C 0.05 2.22 5.70 22.53 0.13 2.35 15 4 C 0.07 2.57 7.28 22.47 0.16 2.74 15 5 F -0.13 -4.76 16.68 44.97 0.75 -4.01 15 6 C -0.08 -2.46 6.32 22.35 0.14 -2.32 15 7 Cl -0.04 -1.15 28.61 -2.72 -0.08 -1.22 15 8 C -0.07 -2.06 9.83 22.30 0.22 -1.84 15 9 C -0.10 -3.19 9.26 22.26 0.21 -2.98 15 10 C -0.04 -1.71 5.01 -19.77 -0.10 -1.81 15 11 C 0.25 11.98 2.67 43.42 0.12 12.10 15 12 H 0.02 1.34 6.43 -2.38 -0.02 1.32 15 13 N -0.84 -36.92 8.79 -174.95 -1.54 -38.46 15 14 C -0.55 -28.96 8.71 25.60 0.22 -28.74 15 15 H 0.04 2.26 7.74 -2.91 -0.02 2.23 15 16 C 0.03 1.49 5.38 84.66 0.46 1.94 15 17 N -0.91 -48.60 11.53 21.45 0.25 -48.35 15 18 Si 0.95 42.41 29.54 68.60 2.03 44.44 15 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 22 H 0.04 1.49 7.17 -2.39 -0.02 1.47 15 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.11 3.23 8.14 -2.39 -0.02 3.21 15 25 H 0.18 3.45 8.06 -2.91 -0.02 3.43 15 26 H 0.16 4.69 6.29 -2.91 -0.02 4.67 15 27 H 0.35 16.76 7.07 -89.69 -0.63 16.13 15 28 H 0.32 12.89 7.20 -89.69 -0.65 12.25 15 29 H 0.27 13.60 8.31 -92.70 -0.77 12.83 15 Total: -1.00 -57.70 271.53 3.23 -54.46 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.06 Total: 24.71 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 2.78 Total: -16.21 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.29 Total: -86.81 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.89 Total: -15.35 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.75 Total: -4.01 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.22 kcal Total: -57.70 3.23 -54.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163349.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.097 kcal (2) G-P(sol) polarization free energy of solvation -57.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds