Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38265 * 119.95395 * 99.71931 * 13 10 9 15 15 C 1.38216 * 120.06448 * 179.73098 * 14 13 10 16 16 Cl 1.73602 * 120.01217 * 180.26253 * 15 14 13 17 17 C 1.38860 * 119.97498 * 0.52769 * 15 14 13 18 18 O 1.35922 * 120.04959 * 179.76570 * 17 15 14 19 19 C 1.38634 * 119.90581 * 359.75220 * 17 15 14 20 20 C 1.38404 * 119.93534 * 359.97438 * 19 17 15 21 21 F 1.35104 * 119.98722 * 180.02562 * 20 19 17 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 111.00551 * 176.04613 * 12 10 9 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.07996 * 119.96495 * 359.97438 * 14 13 10 28 28 H 0.96697 * 114.00759 * 269.98573 * 18 17 15 29 29 H 1.08004 * 120.03493 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2492 -5.7282 -1.0010 15 6 0.5670 -6.9251 -0.8893 16 17 0.2642 -7.8871 -2.3023 17 6 0.1192 -7.3550 0.3528 18 8 -0.5559 -8.5295 0.4637 19 6 0.3620 -6.5848 1.4797 20 6 1.0504 -5.3897 1.3642 21 9 1.2880 -4.6386 2.4618 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 3.7159 -4.3732 -1.2524 26 1 2.3959 -3.7518 -2.0507 27 1 1.5935 -5.3916 -1.9677 28 1 -1.5143 -8.4428 0.3687 29 1 0.0142 -6.9171 2.4467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260167332.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = -74.576220 kcal Electronic energy + Delta-G solvation = -16918.936627 eV Core-core repulsion = 13782.351839 eV Total energy + Delta-G solvation = -3136.584788 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.71671 -39.88680 -37.45558 -36.56614 -34.83295 -32.46697 -30.52143 -29.28998 -28.25602 -24.61720 -22.86722 -22.35724 -20.05255 -18.85884 -17.03635 -16.83889 -16.39295 -15.85859 -15.42253 -15.17588 -14.69818 -14.36117 -14.14505 -13.73073 -13.48190 -12.91043 -12.47975 -12.19309 -11.67797 -11.42954 -11.33770 -11.09851 -10.85442 -10.73765 -10.58494 -10.34155 -9.70847 -9.15600 -8.90127 -8.33575 -8.27354 -8.15327 -5.94382 -3.93565 0.90325 0.99549 2.01470 3.25710 3.39390 3.42754 3.46648 3.81908 4.43593 4.51664 4.59509 4.89157 5.04891 5.24269 5.42850 5.52346 5.56829 5.85630 5.95161 6.01662 6.24784 6.57616 6.71933 7.35606 7.43734 7.60462 7.84785 8.01192 8.05910 8.46175 9.11621 9.68547 11.17441 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.005402 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.382260 B = 5181.675188 C = 5593.601291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.496 4.496 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.134 3.866 11 H 0.089 0.911 12 N -0.819 5.819 13 C -0.126 4.126 14 C -0.079 4.079 15 C -0.069 4.069 16 Cl -0.060 7.060 17 C 0.127 3.873 18 O -0.485 6.485 19 C -0.169 4.169 20 C 0.129 3.871 21 F -0.122 7.122 22 H 0.259 0.741 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.325 0.675 26 H 0.336 0.664 27 H 0.144 0.856 28 H 0.393 0.607 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -15.765 -0.816 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.001 3.999 10 C 0.022 3.978 11 H 0.106 0.894 12 N -0.347 5.347 13 C -0.130 4.130 14 C -0.098 4.098 15 C -0.096 4.096 16 Cl -0.031 7.031 17 C 0.081 3.919 18 O -0.295 6.295 19 C -0.189 4.189 20 C 0.109 3.891 21 F -0.100 7.100 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.137 0.863 26 H 0.150 0.850 27 H 0.161 0.839 28 H 0.249 0.751 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.048 -15.178 -0.624 15.191 hybrid contribution -0.581 0.107 -0.112 0.601 sum -0.629 -15.071 -0.735 15.102 Atomic orbital electron populations 1.69955 1.06040 1.26587 1.51636 1.25012 0.94823 0.99229 0.95749 0.86614 0.79445 0.83047 0.78582 1.20276 1.21590 1.20373 1.21067 0.93369 0.89851 1.49159 0.91870 1.19142 0.92735 0.90517 0.97493 1.20860 0.95002 0.89066 0.92891 0.89353 1.58756 1.17713 1.54439 1.03767 1.21610 1.00303 0.99991 0.91053 1.20675 0.97832 0.91892 0.99385 1.21285 1.05606 0.94898 0.87812 1.98359 1.94729 1.71069 1.38923 1.17648 0.97739 0.86665 0.89842 1.84832 1.23728 1.26476 1.94485 1.21273 1.03433 0.94187 0.99996 1.17328 0.98653 0.89767 0.83364 1.91562 1.92074 1.75081 1.51275 0.93116 0.95940 0.96403 0.86310 0.84956 0.83886 0.75059 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 15 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 15 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.50 -13.79 8.84 -34.44 -0.30 -14.10 15 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 15 9 C 0.04 0.96 4.60 -27.88 -0.13 0.83 15 10 C 0.13 2.61 2.64 -68.86 -0.18 2.43 15 11 H 0.09 1.80 7.94 -51.92 -0.41 1.39 15 12 N -0.82 -14.20 8.43 -5.65 -0.05 -14.25 15 13 C -0.13 -2.10 5.08 -104.53 -0.53 -2.63 15 14 C -0.08 -1.14 9.03 -39.58 -0.36 -1.50 15 15 C -0.07 -0.93 6.33 -39.36 -0.25 -1.17 15 16 Cl -0.06 -0.72 28.50 -51.86 -1.48 -2.20 15 17 C 0.13 1.64 6.70 -39.21 -0.26 1.38 15 18 O -0.48 -5.23 12.96 -19.49 -0.25 -5.49 15 19 C -0.17 -2.29 9.96 -39.37 -0.39 -2.68 15 20 C 0.13 2.10 7.24 -39.44 -0.29 1.81 15 21 F -0.12 -2.18 16.65 2.25 0.04 -2.14 15 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.02 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 25 H 0.33 4.65 9.06 -39.29 -0.36 4.29 15 26 H 0.34 5.48 7.28 -39.29 -0.29 5.19 15 27 H 0.14 1.88 6.24 -52.49 -0.33 1.55 15 28 H 0.39 2.50 9.06 45.56 0.41 2.91 15 29 H 0.15 1.67 8.06 -52.48 -0.42 1.25 15 LS Contribution 276.55 15.07 4.17 4.17 Total: -1.00 -31.13 276.55 -6.43 -37.56 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -1.78 Total: 5.93 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.79 Total: -14.25 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.69 Total: -40.50 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.25 Total: -5.49 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.13 -6.43 -37.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167332.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.016 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds