Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38265 * 119.95395 * 99.71931 * 13 10 9 15 15 C 1.38216 * 120.06448 * 179.73098 * 14 13 10 16 16 Cl 1.73602 * 120.01217 * 180.26253 * 15 14 13 17 17 C 1.38860 * 119.97498 * 0.52769 * 15 14 13 18 18 O 1.35922 * 120.04959 * 179.76570 * 17 15 14 19 19 C 1.38634 * 119.90581 * 359.75220 * 17 15 14 20 20 C 1.38404 * 119.93534 * 359.97438 * 19 17 15 21 21 F 1.35104 * 119.98722 * 180.02562 * 20 19 17 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 111.00551 * 176.04613 * 12 10 9 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.07996 * 119.96495 * 359.97438 * 14 13 10 28 28 H 0.96697 * 114.00759 * 269.98573 * 18 17 15 29 29 H 1.08004 * 120.03493 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2492 -5.7282 -1.0010 15 6 0.5670 -6.9251 -0.8893 16 17 0.2642 -7.8871 -2.3023 17 6 0.1192 -7.3550 0.3528 18 8 -0.5559 -8.5295 0.4637 19 6 0.3620 -6.5848 1.4797 20 6 1.0504 -5.3897 1.3642 21 9 1.2880 -4.6386 2.4618 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 3.7159 -4.3732 -1.2524 26 1 2.3959 -3.7518 -2.0507 27 1 1.5935 -5.3916 -1.9677 28 1 -1.5143 -8.4428 0.3687 29 1 0.0142 -6.9171 2.4467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260167332.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = -97.208678 kcal Electronic energy + Delta-G solvation = -16919.918044 eV Core-core repulsion = 13782.351839 eV Total energy + Delta-G solvation = -3137.566205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02519 -40.99495 -38.62537 -37.58492 -36.25348 -34.48357 -31.69224 -30.55660 -30.07524 -26.31023 -24.21899 -23.73729 -21.58754 -19.89049 -18.64056 -18.20387 -17.61712 -17.28264 -16.88185 -16.62174 -16.26638 -15.81597 -15.35238 -14.94383 -14.82453 -14.30967 -13.91819 -13.89565 -13.27249 -12.83533 -12.79550 -12.58064 -12.39040 -12.28452 -12.11610 -11.77993 -11.49993 -11.25647 -10.51515 -10.06238 -9.57262 -9.48999 -8.12651 -6.18951 -0.24374 -0.11297 0.96355 1.43294 1.46152 1.53641 2.13032 2.47113 2.79237 3.20697 3.29570 3.51043 3.61814 3.78684 4.06304 4.35009 4.47085 4.56461 4.69687 4.78627 4.86721 5.06505 5.42639 5.46440 5.62426 5.84852 6.24901 6.42127 6.61350 6.75771 6.94089 7.47571 8.99118 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.005402 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.382260 B = 5181.675188 C = 5593.601291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.047 3.953 10 C 0.150 3.850 11 H 0.074 0.926 12 N -0.825 5.825 13 C -0.146 4.146 14 C -0.073 4.073 15 C -0.073 4.073 16 Cl -0.043 7.043 17 C 0.145 3.855 18 O -0.484 6.484 19 C -0.163 4.163 20 C 0.109 3.891 21 F -0.139 7.139 22 H 0.260 0.740 23 H -0.008 1.008 24 H -0.005 1.005 25 H 0.345 0.655 26 H 0.342 0.658 27 H 0.155 0.845 28 H 0.416 0.584 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.373 -17.025 -1.316 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.010 3.990 10 C 0.037 3.963 11 H 0.092 0.908 12 N -0.356 5.356 13 C -0.150 4.150 14 C -0.092 4.092 15 C -0.100 4.100 16 Cl -0.014 7.014 17 C 0.099 3.901 18 O -0.298 6.298 19 C -0.182 4.182 20 C 0.089 3.911 21 F -0.117 7.117 22 H 0.069 0.931 23 H 0.010 0.990 24 H 0.014 0.986 25 H 0.159 0.841 26 H 0.157 0.843 27 H 0.172 0.828 28 H 0.277 0.723 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.243 -16.464 -1.132 16.505 hybrid contribution -0.741 0.347 0.010 0.819 sum -0.499 -16.118 -1.122 16.165 Atomic orbital electron populations 1.70086 1.07602 1.27439 1.52797 1.25886 0.95675 1.02993 0.95476 0.85560 0.78206 0.78617 0.78960 1.19424 1.21235 1.19566 1.21443 0.93511 0.91306 1.48476 0.92006 1.18913 0.93106 0.92201 0.94816 1.20263 0.93810 0.88780 0.93427 0.90790 1.58615 1.18153 1.55757 1.03055 1.21262 1.01978 0.99489 0.92257 1.20729 0.97458 0.92003 0.99021 1.21362 1.05167 0.94730 0.88768 1.98368 1.94559 1.70435 1.38031 1.17643 0.96730 0.86510 0.89258 1.84785 1.25586 1.25082 1.94313 1.21445 1.02379 0.93011 1.01396 1.17622 0.99843 0.90847 0.82836 1.91514 1.92409 1.75773 1.52026 0.93110 0.99006 0.98639 0.84065 0.84253 0.82803 0.72331 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.29 21.45 0.28 -57.02 15 2 C 0.00 -0.22 5.46 84.66 0.46 0.25 15 3 Si 0.96 45.25 29.54 68.60 2.03 47.28 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 15 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 7 C -0.51 -28.87 8.84 25.60 0.23 -28.64 15 8 H 0.06 3.45 7.74 -2.91 -0.02 3.42 15 9 C 0.05 2.43 4.60 29.85 0.14 2.56 15 10 C 0.15 5.95 2.64 44.17 0.12 6.07 15 11 H 0.07 3.11 7.94 -2.38 -0.02 3.09 15 12 N -0.83 -28.34 8.43 -171.79 -1.45 -29.79 15 13 C -0.15 -4.88 5.08 -19.81 -0.10 -4.98 15 14 C -0.07 -2.03 9.03 22.27 0.20 -1.83 15 15 C -0.07 -1.80 6.33 22.41 0.14 -1.66 15 16 Cl -0.04 -0.93 28.50 -2.72 -0.08 -1.01 15 17 C 0.14 3.37 6.70 22.51 0.15 3.52 15 18 O -0.48 -8.76 12.96 -92.67 -1.20 -9.97 15 19 C -0.16 -4.13 9.96 22.40 0.22 -3.91 15 20 C 0.11 3.52 7.24 22.36 0.16 3.69 15 21 F -0.14 -5.10 16.65 44.97 0.75 -4.35 15 22 H 0.26 15.08 8.31 -92.71 -0.77 14.31 15 23 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 15 24 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 25 H 0.35 9.50 9.06 -89.70 -0.81 8.69 15 26 H 0.34 10.99 7.28 -89.70 -0.65 10.34 15 27 H 0.15 3.83 6.24 -2.91 -0.02 3.81 15 28 H 0.42 3.73 9.06 -74.06 -0.67 3.05 15 29 H 0.17 3.45 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -67.26 276.55 1.15 -66.12 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.91 Total: 13.67 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 1.72 Total: -24.93 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -1.16 Total: -86.81 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.20 Total: -9.97 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.75 Total: -4.35 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -67.26 1.15 -66.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167332.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.090 kcal (2) G-P(sol) polarization free energy of solvation -67.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds