Wall clock time and date at job start Mon Mar 30 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99742 * 2 1 4 4 H 1.48502 * 109.47120 * 239.99996 * 3 2 1 5 5 H 1.48498 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46945 * 120.00001 * 3 2 1 7 7 C 1.37874 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46952 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47251 * 55.00735 * 10 9 7 12 12 N 1.46897 * 109.47440 * 295.00167 * 10 9 7 13 13 C 1.50701 * 109.47024 * 175.00001 * 10 9 7 14 14 C 1.38407 * 120.03227 * 75.02372 * 13 10 9 15 15 F 1.35102 * 119.98593 * 359.97438 * 14 13 10 16 16 C 1.38460 * 120.02675 * 180.02562 * 14 13 10 17 17 C 1.38265 * 120.09310 * 359.95747 * 16 14 13 18 18 C 1.38221 * 120.06575 * 0.04577 * 17 16 14 19 19 Cl 1.73595 * 120.01168 * 180.25752 * 18 17 16 20 20 C 1.38631 * 120.03627 * 255.00389 * 13 10 9 21 21 O 1.35924 * 120.04631 * 0.04457 * 20 13 10 22 22 H 0.97000 * 120.00417 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46792 * 60.00056 * 9 7 2 24 24 H 1.08999 * 109.47314 * 300.00680 * 9 7 2 25 25 H 1.00893 * 111.00016 * 299.99857 * 12 10 9 26 26 H 1.00897 * 110.99865 * 63.95308 * 12 10 9 27 27 H 1.07994 * 119.95027 * 179.97438 * 16 14 13 28 28 H 1.08002 * 119.96752 * 180.02562 * 17 16 14 29 29 H 0.96702 * 113.99645 * 269.97808 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9294 -3.5551 0.8414 12 7 3.0084 -3.6538 -1.2557 13 6 1.4960 -4.9636 0.1233 14 6 0.8070 -5.4724 -0.9639 15 9 0.8057 -4.8016 -2.1366 16 6 0.1181 -6.6680 -0.8499 17 6 0.1177 -7.3562 0.3493 18 6 0.8044 -6.8516 1.4376 19 17 0.8086 -7.7202 2.9406 20 6 1.4963 -5.6528 1.3262 21 8 2.1718 -5.1550 2.3955 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.3963 -3.7517 -2.0517 26 1 3.5701 -2.8191 -1.3319 27 1 -0.4194 -7.0637 -1.6989 28 1 -0.4200 -8.2889 0.4359 29 1 3.0906 -5.4511 2.4529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260176048.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:19 Heat of formation + Delta-G solvation = -77.932970 kcal Electronic energy + Delta-G solvation = -17226.846062 eV Core-core repulsion = 14090.115715 eV Total energy + Delta-G solvation = -3136.730347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.75506 -39.77672 -36.62399 -36.40467 -35.40355 -32.49494 -30.01092 -29.47650 -27.96872 -24.70573 -22.62505 -22.47023 -20.11454 -18.58198 -17.28048 -16.43833 -16.37580 -16.00225 -15.46676 -14.65723 -14.59446 -14.40627 -13.87499 -13.31578 -12.99703 -12.78413 -12.54424 -12.43591 -11.95536 -11.42420 -11.15982 -11.10845 -10.91598 -10.81921 -10.49629 -10.19818 -9.96159 -9.21814 -8.71962 -8.44935 -8.37862 -7.77383 -6.07715 -4.12516 1.01793 1.17312 2.12441 3.28750 3.33692 3.35225 3.42725 4.03748 4.38437 4.49375 4.73555 4.97703 5.18127 5.27619 5.50417 5.67085 5.83620 5.97920 6.06677 6.09473 6.50259 6.64152 6.77518 7.44043 7.54675 7.68351 7.84707 7.98940 8.19709 8.30225 8.92851 9.52182 11.03206 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.006010 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.189247 B = 4657.408229 C = 5151.451862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.129 3.871 11 H 0.088 0.912 12 N -0.849 5.849 13 C -0.097 4.097 14 C 0.130 3.870 15 F -0.122 7.122 16 C -0.154 4.154 17 C -0.085 4.085 18 C -0.074 4.074 19 Cl -0.062 7.062 20 C 0.145 3.855 21 O -0.474 6.474 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.021 0.979 25 H 0.337 0.663 26 H 0.349 0.651 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -15.118 0.677 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.036 4.036 10 C 0.018 3.982 11 H 0.106 0.894 12 N -0.382 5.382 13 C -0.099 4.099 14 C 0.110 3.890 15 F -0.101 7.101 16 C -0.173 4.173 17 C -0.104 4.104 18 C -0.102 4.102 19 Cl -0.033 7.033 20 C 0.099 3.901 21 O -0.283 6.283 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.153 0.847 26 H 0.162 0.838 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.674 -15.416 1.170 15.551 hybrid contribution 0.165 1.673 -0.309 1.709 sum 1.840 -13.743 0.861 13.892 Atomic orbital electron populations 1.69959 1.06134 1.26915 1.49858 1.25008 0.94837 0.99320 0.94987 0.86615 0.79544 0.82936 0.78660 1.20177 1.21272 1.20139 1.21041 0.92804 0.90599 1.51865 0.92502 1.19767 0.94372 0.91469 0.97976 1.20438 0.95066 0.88952 0.93725 0.89420 1.59372 1.28530 1.45944 1.04351 1.20562 0.99475 0.98803 0.91100 1.17352 0.98395 0.91466 0.81829 1.91393 1.94309 1.79391 1.44994 1.21031 1.02169 0.94953 0.99120 1.20629 0.98845 1.00372 0.90521 1.21295 1.05311 0.94569 0.88978 1.98350 1.97600 1.75482 1.31905 1.17608 0.95978 0.89868 0.86678 1.84910 1.28399 1.72132 1.42901 0.92796 0.96265 0.96068 0.84740 0.83769 0.83912 0.84024 0.75196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.52 -14.40 8.55 -34.44 -0.29 -14.70 15 8 H 0.06 1.49 7.15 -52.49 -0.38 1.11 15 9 C 0.00 0.07 4.55 -27.88 -0.13 -0.06 15 10 C 0.13 2.67 2.80 -68.87 -0.19 2.48 15 11 H 0.09 1.81 7.14 -51.93 -0.37 1.44 15 12 N -0.85 -16.29 9.07 -5.66 -0.05 -16.35 15 13 C -0.10 -1.77 4.96 -104.41 -0.52 -2.29 15 14 C 0.13 2.19 7.02 -39.44 -0.28 1.92 15 15 F -0.12 -2.20 13.93 2.25 0.03 -2.17 15 16 C -0.15 -2.05 10.02 -39.49 -0.40 -2.45 15 17 C -0.08 -1.05 9.82 -39.58 -0.39 -1.44 15 18 C -0.07 -1.05 6.33 -39.36 -0.25 -1.30 15 19 Cl -0.06 -0.78 28.50 -51.86 -1.48 -2.26 15 20 C 0.15 2.37 6.67 -39.20 -0.26 2.11 15 21 O -0.47 -7.32 11.80 -19.50 -0.23 -7.55 15 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 23 H 0.02 0.53 7.74 -51.93 -0.40 0.13 15 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.34 6.50 6.13 -39.30 -0.24 6.26 15 26 H 0.35 6.76 7.90 -39.29 -0.31 6.45 15 27 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.14 1.32 8.06 -52.49 -0.42 0.90 15 29 H 0.39 4.17 9.06 45.56 0.41 4.58 15 LS Contribution 271.33 15.07 4.09 4.09 Total: -1.00 -30.86 271.33 -6.41 -37.27 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -1.69 Total: 10.64 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -2.80 Total: -14.11 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.69 Total: -42.29 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.23 Total: -7.55 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.03 Total: -2.17 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.48 Total: -2.26 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.86 -6.41 -37.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176048.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.661 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds