Wall clock time and date at job start Mon Mar 30 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99742 * 2 1 4 4 H 1.48502 * 109.47120 * 239.99996 * 3 2 1 5 5 H 1.48498 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46945 * 120.00001 * 3 2 1 7 7 C 1.37874 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46952 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47251 * 55.00735 * 10 9 7 12 12 N 1.46897 * 109.47440 * 295.00167 * 10 9 7 13 13 C 1.50701 * 109.47024 * 175.00001 * 10 9 7 14 14 C 1.38407 * 120.03227 * 75.02372 * 13 10 9 15 15 F 1.35102 * 119.98593 * 359.97438 * 14 13 10 16 16 C 1.38460 * 120.02675 * 180.02562 * 14 13 10 17 17 C 1.38265 * 120.09310 * 359.95747 * 16 14 13 18 18 C 1.38221 * 120.06575 * 0.04577 * 17 16 14 19 19 Cl 1.73595 * 120.01168 * 180.25752 * 18 17 16 20 20 C 1.38631 * 120.03627 * 255.00389 * 13 10 9 21 21 O 1.35924 * 120.04631 * 0.04457 * 20 13 10 22 22 H 0.97000 * 120.00417 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46792 * 60.00056 * 9 7 2 24 24 H 1.08999 * 109.47314 * 300.00680 * 9 7 2 25 25 H 1.00893 * 111.00016 * 299.99857 * 12 10 9 26 26 H 1.00897 * 110.99865 * 63.95308 * 12 10 9 27 27 H 1.07994 * 119.95027 * 179.97438 * 16 14 13 28 28 H 1.08002 * 119.96752 * 180.02562 * 17 16 14 29 29 H 0.96702 * 113.99645 * 269.97808 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9294 -3.5551 0.8414 12 7 3.0084 -3.6538 -1.2557 13 6 1.4960 -4.9636 0.1233 14 6 0.8070 -5.4724 -0.9639 15 9 0.8057 -4.8016 -2.1366 16 6 0.1181 -6.6680 -0.8499 17 6 0.1177 -7.3562 0.3493 18 6 0.8044 -6.8516 1.4376 19 17 0.8086 -7.7202 2.9406 20 6 1.4963 -5.6528 1.3262 21 8 2.1718 -5.1550 2.3955 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.3963 -3.7517 -2.0517 26 1 3.5701 -2.8191 -1.3319 27 1 -0.4194 -7.0637 -1.6989 28 1 -0.4200 -8.2889 0.4359 29 1 3.0906 -5.4511 2.4529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260176048.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:19 Heat of formation + Delta-G solvation = -100.526812 kcal Electronic energy + Delta-G solvation = -17227.825805 eV Core-core repulsion = 14090.115715 eV Total energy + Delta-G solvation = -3137.710090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.07664 -40.98734 -37.76482 -37.64058 -36.93003 -34.55179 -31.31335 -30.62533 -29.94925 -26.43883 -24.10309 -23.80789 -21.70530 -19.79959 -18.89198 -18.10904 -17.59557 -17.32511 -16.79791 -16.57151 -15.98330 -15.79361 -15.23528 -14.83045 -14.50885 -14.30456 -13.86964 -13.84260 -13.67784 -13.13581 -12.78767 -12.54353 -12.25371 -12.22813 -12.10639 -11.86945 -11.71349 -11.17028 -10.63982 -9.97695 -9.55578 -9.41623 -8.24523 -6.37513 -0.14648 0.00621 1.03881 1.38150 1.41112 1.48789 2.26789 2.37625 2.89168 3.08539 3.33876 3.47797 3.83107 3.99811 4.14760 4.38017 4.53374 4.71921 4.81579 4.93769 4.98040 5.03710 5.29786 5.46343 5.62006 5.69779 6.10172 6.28485 6.61974 6.67324 6.77726 7.32448 8.87078 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.006010 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.189247 B = 4657.408229 C = 5151.451862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.014 3.986 10 C 0.144 3.856 11 H 0.084 0.916 12 N -0.835 5.835 13 C -0.132 4.132 14 C 0.106 3.894 15 F -0.136 7.136 16 C -0.142 4.142 17 C -0.066 4.066 18 C -0.078 4.078 19 Cl -0.046 7.046 20 C 0.139 3.861 21 O -0.489 6.489 22 H 0.263 0.737 23 H -0.010 1.010 24 H -0.019 1.019 25 H 0.337 0.663 26 H 0.346 0.654 27 H 0.177 0.823 28 H 0.183 0.817 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -16.478 0.751 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.025 4.025 10 C 0.032 3.968 11 H 0.102 0.898 12 N -0.368 5.368 13 C -0.134 4.134 14 C 0.086 3.914 15 F -0.115 7.115 16 C -0.161 4.161 17 C -0.084 4.084 18 C -0.106 4.106 19 Cl -0.017 7.017 20 C 0.092 3.908 21 O -0.301 6.301 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.000 1.000 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.195 0.805 28 H 0.200 0.800 29 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.193 -16.800 1.245 16.988 hybrid contribution -0.019 1.983 -0.274 2.002 sum 2.174 -14.818 0.971 15.008 Atomic orbital electron populations 1.70112 1.08023 1.27897 1.51180 1.25996 0.95687 1.03493 0.94493 0.85456 0.78174 0.77837 0.79309 1.18784 1.21188 1.19181 1.21480 0.93516 0.91499 1.51102 0.91405 1.19599 0.94560 0.93755 0.94539 1.20076 0.93815 0.88853 0.94069 0.89791 1.59382 1.27991 1.45465 1.03913 1.20425 1.01449 0.98623 0.92900 1.17734 0.99635 0.92863 0.81173 1.91349 1.94533 1.79971 1.45617 1.21399 1.00834 0.93196 1.00640 1.21121 0.97116 1.01058 0.89149 1.21414 1.04880 0.94022 0.90247 1.98358 1.97509 1.74788 1.31009 1.17713 0.96487 0.90569 0.86023 1.84852 1.29904 1.72746 1.42640 0.92786 0.99200 1.00029 0.84714 0.84062 0.80545 0.80002 0.73095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.20 15 2 C 0.00 0.09 5.46 84.65 0.46 0.55 15 3 Si 0.97 44.18 29.54 68.60 2.03 46.20 15 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 15 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 7 C -0.54 -30.16 8.55 25.60 0.22 -29.94 15 8 H 0.07 3.56 7.15 -2.91 -0.02 3.54 15 9 C 0.01 0.76 4.55 29.85 0.14 0.89 15 10 C 0.14 6.10 2.80 44.17 0.12 6.22 15 11 H 0.08 3.56 7.14 -2.39 -0.02 3.54 15 12 N -0.84 -32.52 9.07 -171.81 -1.56 -34.08 15 13 C -0.13 -4.85 4.96 -19.73 -0.10 -4.95 15 14 C 0.11 3.54 7.02 22.36 0.16 3.70 15 15 F -0.14 -4.97 13.93 44.97 0.63 -4.34 15 16 C -0.14 -3.43 10.02 22.33 0.22 -3.21 15 17 C -0.07 -1.41 9.82 22.27 0.22 -1.19 15 18 C -0.08 -2.04 6.33 22.42 0.14 -1.90 15 19 Cl -0.05 -1.04 28.50 -2.72 -0.08 -1.12 15 20 C 0.14 4.45 6.67 22.51 0.15 4.60 15 21 O -0.49 -15.01 11.80 -92.69 -1.09 -16.10 15 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 15 23 H -0.01 -0.61 7.74 -2.39 -0.02 -0.63 15 24 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 15 25 H 0.34 13.28 6.13 -89.70 -0.55 12.73 15 26 H 0.35 13.54 7.90 -89.70 -0.71 12.83 15 27 H 0.18 3.02 8.06 -2.91 -0.02 2.99 15 28 H 0.18 2.44 8.06 -2.91 -0.02 2.42 15 29 H 0.41 8.53 9.06 -74.06 -0.67 7.86 15 Total: -1.00 -68.34 271.33 1.24 -67.10 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.70 Total: 24.76 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 1.73 Total: -25.24 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.27 Total: -91.27 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -1.09 Total: -16.10 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.63 Total: -4.34 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -68.34 1.24 -67.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176048.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.422 kcal (2) G-P(sol) polarization free energy of solvation -68.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds