Wall clock time and date at job start Mon Mar 30 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48496 * 109.47572 * 89.99671 * 3 2 1 5 5 H 1.48499 * 109.47243 * 209.99836 * 3 2 1 6 6 H 1.48502 * 109.47327 * 329.99359 * 3 2 1 7 7 C 1.37877 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99996 * 175.08888 * 7 2 1 9 9 C 1.50692 * 119.99824 * 355.09647 * 7 2 1 10 10 H 1.08994 * 109.47314 * 325.05672 * 9 7 2 11 11 C 1.53007 * 109.47390 * 85.05631 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.19998 * 11 9 7 13 13 C 1.50699 * 109.47270 * 205.05629 * 9 7 2 14 14 C 1.38254 * 119.95153 * 299.72748 * 13 9 7 15 15 C 1.38152 * 120.09662 * 179.72344 * 14 13 9 16 16 C 1.38739 * 120.00789 * 0.54841 * 15 14 13 17 17 O 1.35922 * 120.04751 * 179.74619 * 16 15 14 18 18 C 1.38758 * 119.89953 * 359.72718 * 16 15 14 19 19 Cl 1.73607 * 120.04421 * 179.97438 * 18 16 15 20 20 C 1.38461 * 119.95845 * 120.00133 * 13 9 7 21 21 F 1.35103 * 120.00043 * 0.02562 * 20 13 9 22 22 H 0.97002 * 120.00195 * 174.51172 * 1 2 3 23 23 H 1.09006 * 109.46829 * 305.20202 * 11 9 7 24 24 H 1.08999 * 109.46972 * 65.19952 * 11 9 7 25 25 H 1.00900 * 111.00360 * 56.04425 * 12 11 9 26 26 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.95309 * 359.97438 * 14 13 9 28 28 H 1.08005 * 119.99978 * 180.27494 * 15 14 13 29 29 H 0.96694 * 113.99758 * 269.97401 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0795 9 6 1.2553 -2.4966 0.1127 10 1 0.3900 -2.3634 0.7619 11 6 0.7878 -2.9374 -1.2760 12 7 -0.0475 -4.1394 -1.1529 13 6 2.1627 -3.5496 0.6948 14 6 3.3291 -3.8954 0.0381 15 6 4.1660 -4.8562 0.5720 16 6 3.8309 -5.4839 1.7631 17 8 4.6511 -6.4330 2.2864 18 6 2.6574 -5.1410 2.4194 19 17 2.2341 -5.9245 3.9096 20 6 1.8243 -4.1735 1.8837 21 9 0.6810 -3.8385 2.5208 22 1 -0.4850 -0.8362 -0.0803 23 1 0.2073 -2.1369 -1.7349 24 1 1.6551 -3.1597 -1.8977 25 1 -0.8239 -3.9779 -0.5290 26 1 -0.3687 -4.4508 -2.0572 27 1 3.5885 -3.4108 -0.8916 28 1 5.0790 -5.1219 0.0600 29 1 4.4542 -7.3312 1.9875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260360481.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:00 Heat of formation + Delta-G solvation = -82.637475 kcal Electronic energy + Delta-G solvation = -17359.063293 eV Core-core repulsion = 14222.128943 eV Total energy + Delta-G solvation = -3136.934350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.35140 -39.41966 -37.06252 -36.26965 -34.89212 -32.49044 -30.35863 -30.03129 -26.82627 -23.90888 -22.93824 -22.21253 -20.14847 -18.50599 -17.24343 -16.56714 -16.20843 -15.70163 -15.22573 -14.72869 -14.35012 -14.06928 -13.76814 -13.54957 -13.32238 -12.60883 -12.40998 -12.08926 -11.82868 -11.46246 -11.18285 -10.89384 -10.86013 -10.55623 -10.44865 -10.21353 -9.87021 -8.93341 -8.54906 -8.33014 -8.04895 -7.88537 -6.52494 -4.28025 1.37881 1.50238 2.31380 3.37549 3.38664 3.54636 3.81284 4.15819 4.41417 4.83641 5.13237 5.15149 5.38848 5.40597 5.63642 5.82701 6.06635 6.24813 6.39116 6.45642 6.55016 6.71616 6.91738 7.09499 7.33902 7.66044 7.70885 7.96561 8.03454 8.25847 8.66551 9.43954 10.84385 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.006901 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.163345 B = 4056.223735 C = 4132.563773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 1.069 2.931 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.593 4.593 8 H 0.057 0.943 9 C 0.064 3.936 10 H 0.047 0.953 11 C 0.069 3.931 12 N -0.857 5.857 13 C -0.031 4.031 14 C -0.069 4.069 15 C -0.144 4.144 16 C 0.107 3.893 17 O -0.487 6.487 18 C -0.099 4.099 19 Cl -0.060 7.060 20 C 0.114 3.886 21 F -0.126 7.126 22 H 0.270 0.730 23 H 0.029 0.971 24 H 0.058 0.942 25 H 0.333 0.667 26 H 0.325 0.675 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -10.718 0.063 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.897 3.103 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.631 4.631 8 H 0.075 0.925 9 C 0.044 3.956 10 H 0.065 0.935 11 C -0.062 4.062 12 N -0.385 5.385 13 C -0.033 4.033 14 C -0.087 4.087 15 C -0.163 4.163 16 C 0.062 3.938 17 O -0.296 6.296 18 C -0.127 4.127 19 Cl -0.032 7.032 20 C 0.094 3.906 21 F -0.105 7.105 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.145 0.855 26 H 0.136 0.864 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.335 -8.985 0.886 10.487 hybrid contribution -0.992 -1.524 -0.401 1.862 sum 4.343 -10.509 0.485 11.382 Atomic orbital electron populations 1.70772 1.06934 1.30978 1.45076 1.25876 0.96393 1.02690 0.93017 0.83531 0.74717 0.74947 0.77088 1.21196 1.21217 1.21001 1.21873 0.94671 0.90398 1.56191 0.92461 1.18065 0.94314 0.91044 0.92136 0.93465 1.22203 0.95669 0.88733 0.99567 1.58971 1.26732 1.37191 1.15606 1.20368 0.96469 0.94972 0.91458 1.20845 0.92516 0.95329 1.00012 1.21311 1.00940 0.99214 0.94799 1.17694 0.88755 0.94567 0.92821 1.84852 1.55208 1.18419 1.71099 1.21327 0.97409 1.01571 0.92425 1.98332 1.93123 1.79589 1.32115 1.17138 0.83914 0.96494 0.93091 1.91488 1.46891 1.91181 1.80920 0.91870 0.95277 0.92320 0.85532 0.86438 0.84427 0.84823 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 13.57 55.43 0.75 -24.97 15 2 C 0.03 0.69 5.45 -17.82 -0.10 0.59 15 3 Si 1.07 24.05 29.91 -169.99 -5.08 18.97 15 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.59 -15.36 8.11 -34.44 -0.28 -15.64 15 8 H 0.06 1.47 7.43 -52.48 -0.39 1.08 15 9 C 0.06 1.48 1.68 -92.92 -0.16 1.32 15 10 H 0.05 1.23 6.06 -51.93 -0.31 0.91 15 11 C 0.07 1.42 5.89 -3.82 -0.02 1.40 15 12 N -0.86 -15.13 9.34 -10.37 -0.10 -15.22 15 13 C -0.03 -0.66 4.51 -104.53 -0.47 -1.13 15 14 C -0.07 -1.25 8.50 -39.61 -0.34 -1.58 15 15 C -0.14 -2.25 9.98 -39.43 -0.39 -2.64 15 16 C 0.11 1.73 6.70 -39.20 -0.26 1.47 15 17 O -0.49 -6.59 12.96 -19.50 -0.25 -6.84 15 18 C -0.10 -1.80 6.34 -39.31 -0.25 -2.05 15 19 Cl -0.06 -0.99 28.16 -51.86 -1.46 -2.45 15 20 C 0.11 2.34 7.22 -39.42 -0.28 2.06 15 21 F -0.13 -2.76 15.76 2.25 0.04 -2.72 15 22 H 0.27 7.61 6.25 -40.82 -0.26 7.35 15 23 H 0.03 0.66 7.60 -51.93 -0.39 0.26 15 24 H 0.06 1.17 7.20 -51.93 -0.37 0.80 15 25 H 0.33 5.90 8.99 -39.29 -0.35 5.55 15 26 H 0.33 4.87 9.08 -39.29 -0.36 4.51 15 27 H 0.14 2.38 7.52 -52.49 -0.39 1.99 15 28 H 0.13 1.69 8.06 -52.48 -0.42 1.27 15 29 H 0.39 3.35 9.06 45.56 0.41 3.76 15 LS Contribution 272.67 15.07 4.11 4.11 Total: -1.00 -29.27 272.67 -6.19 -35.45 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -1.64 Total: 9.88 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.55 Total: -16.20 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.66 Total: -40.19 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.25 Total: -6.84 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.97 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.46 Total: -2.45 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.27 -6.19 -35.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360481.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.183 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds