Wall clock time and date at job start Mon Mar 30 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48496 * 109.47572 * 89.99671 * 3 2 1 5 5 H 1.48499 * 109.47243 * 209.99836 * 3 2 1 6 6 H 1.48502 * 109.47327 * 329.99359 * 3 2 1 7 7 C 1.37877 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99996 * 175.08888 * 7 2 1 9 9 C 1.50692 * 119.99824 * 355.09647 * 7 2 1 10 10 H 1.08994 * 109.47314 * 325.05672 * 9 7 2 11 11 C 1.53007 * 109.47390 * 85.05631 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.19998 * 11 9 7 13 13 C 1.50699 * 109.47270 * 205.05629 * 9 7 2 14 14 C 1.38254 * 119.95153 * 299.72748 * 13 9 7 15 15 C 1.38152 * 120.09662 * 179.72344 * 14 13 9 16 16 C 1.38739 * 120.00789 * 0.54841 * 15 14 13 17 17 O 1.35922 * 120.04751 * 179.74619 * 16 15 14 18 18 C 1.38758 * 119.89953 * 359.72718 * 16 15 14 19 19 Cl 1.73607 * 120.04421 * 179.97438 * 18 16 15 20 20 C 1.38461 * 119.95845 * 120.00133 * 13 9 7 21 21 F 1.35103 * 120.00043 * 0.02562 * 20 13 9 22 22 H 0.97002 * 120.00195 * 174.51172 * 1 2 3 23 23 H 1.09006 * 109.46829 * 305.20202 * 11 9 7 24 24 H 1.08999 * 109.46972 * 65.19952 * 11 9 7 25 25 H 1.00900 * 111.00360 * 56.04425 * 12 11 9 26 26 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.95309 * 359.97438 * 14 13 9 28 28 H 1.08005 * 119.99978 * 180.27494 * 15 14 13 29 29 H 0.96694 * 113.99758 * 269.97401 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0795 9 6 1.2553 -2.4966 0.1127 10 1 0.3900 -2.3634 0.7619 11 6 0.7878 -2.9374 -1.2760 12 7 -0.0475 -4.1394 -1.1529 13 6 2.1627 -3.5496 0.6948 14 6 3.3291 -3.8954 0.0381 15 6 4.1660 -4.8562 0.5720 16 6 3.8309 -5.4839 1.7631 17 8 4.6511 -6.4330 2.2864 18 6 2.6574 -5.1410 2.4194 19 17 2.2341 -5.9245 3.9096 20 6 1.8243 -4.1735 1.8837 21 9 0.6810 -3.8385 2.5208 22 1 -0.4850 -0.8362 -0.0803 23 1 0.2073 -2.1369 -1.7349 24 1 1.6551 -3.1597 -1.8977 25 1 -0.8239 -3.9779 -0.5290 26 1 -0.3687 -4.4508 -2.0572 27 1 3.5885 -3.4108 -0.8916 28 1 5.0790 -5.1219 0.0600 29 1 4.4542 -7.3312 1.9875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260360481.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:00 Heat of formation + Delta-G solvation = -103.959850 kcal Electronic energy + Delta-G solvation = -17359.987901 eV Core-core repulsion = 14222.128943 eV Total energy + Delta-G solvation = -3137.858958 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.94416 -40.76242 -38.49047 -37.57949 -36.44034 -34.32175 -31.90485 -31.42314 -28.45762 -25.82642 -24.38969 -23.63762 -21.80838 -19.78001 -19.08358 -18.07351 -17.62486 -17.14058 -16.77507 -16.25651 -15.77337 -15.62957 -15.46376 -15.18927 -14.75805 -14.19107 -14.08984 -13.53147 -13.37280 -13.06688 -12.77777 -12.50894 -12.28873 -12.01841 -11.94979 -11.82567 -11.54323 -10.80744 -10.55948 -9.72573 -9.59307 -9.37282 -8.61356 -6.36849 -0.01737 0.12563 0.95737 1.55200 1.61680 1.78918 2.42801 2.57926 2.86476 3.17336 3.48879 3.77582 3.85692 3.95675 4.24036 4.33809 4.63889 4.70269 4.81378 4.95701 5.07191 5.13958 5.34365 5.55532 5.73209 5.93249 6.17989 6.24817 6.54801 6.66703 6.73474 7.42698 8.75490 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.006901 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.163345 B = 4056.223735 C = 4132.563773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.025 4.025 3 Si 1.111 2.889 4 H -0.282 1.282 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.596 4.596 8 H 0.058 0.942 9 C 0.065 3.935 10 H 0.009 0.991 11 C 0.085 3.915 12 N -0.847 5.847 13 C -0.058 4.058 14 C -0.071 4.071 15 C -0.126 4.126 16 C 0.126 3.874 17 O -0.485 6.485 18 C -0.108 4.108 19 Cl -0.049 7.049 20 C 0.087 3.913 21 F -0.145 7.145 22 H 0.259 0.741 23 H 0.001 0.999 24 H 0.069 0.931 25 H 0.333 0.667 26 H 0.344 0.656 27 H 0.145 0.855 28 H 0.174 0.826 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -12.166 -0.306 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.224 4.224 3 Si 0.933 3.067 4 H -0.208 1.208 5 H -0.187 1.187 6 H -0.213 1.213 7 C -0.634 4.634 8 H 0.077 0.923 9 C 0.046 3.954 10 H 0.027 0.973 11 C -0.046 4.046 12 N -0.376 5.376 13 C -0.060 4.060 14 C -0.090 4.090 15 C -0.145 4.145 16 C 0.080 3.920 17 O -0.297 6.297 18 C -0.136 4.136 19 Cl -0.020 7.020 20 C 0.067 3.933 21 F -0.123 7.123 22 H 0.069 0.931 23 H 0.019 0.981 24 H 0.088 0.912 25 H 0.144 0.856 26 H 0.156 0.844 27 H 0.163 0.837 28 H 0.192 0.808 29 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.745 -10.490 0.502 13.049 hybrid contribution -1.666 -1.260 -0.233 2.102 sum 6.079 -11.750 0.270 13.232 Atomic orbital electron populations 1.70872 1.07981 1.30375 1.47943 1.27143 0.96465 1.06165 0.92650 0.83006 0.74612 0.71641 0.77403 1.20797 1.18722 1.21251 1.22218 0.94874 0.91674 1.54670 0.92323 1.17878 0.93392 0.91409 0.92748 0.97276 1.21852 0.96008 0.88865 0.97861 1.58870 1.26641 1.35345 1.16758 1.20205 0.97544 0.95729 0.92473 1.20968 0.91879 0.95916 1.00192 1.21635 1.01372 0.97260 0.94205 1.17756 0.87591 0.94489 0.92143 1.84798 1.54196 1.19666 1.71089 1.21472 0.97831 1.01237 0.93109 1.98331 1.93189 1.79128 1.31392 1.17385 0.84249 0.98069 0.93627 1.91432 1.48028 1.91584 1.81291 0.93099 0.98105 0.91230 0.85618 0.84384 0.83746 0.80821 0.72844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.57 21.45 0.29 -54.90 15 2 C -0.03 -1.38 5.45 84.66 0.46 -0.92 15 3 Si 1.11 48.56 29.91 68.60 2.05 50.61 15 4 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 5 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 6 H -0.29 -12.54 7.11 99.48 0.71 -11.84 15 7 C -0.60 -31.27 8.11 25.60 0.21 -31.06 15 8 H 0.06 2.99 7.43 -2.91 -0.02 2.97 15 9 C 0.06 3.10 1.68 -12.29 -0.02 3.08 15 10 H 0.01 0.50 6.06 -2.39 -0.01 0.48 15 11 C 0.09 3.57 5.89 86.31 0.51 4.08 15 12 N -0.85 -29.83 9.34 -186.72 -1.74 -31.58 15 13 C -0.06 -2.42 4.51 -19.81 -0.09 -2.51 15 14 C -0.07 -2.43 8.50 22.25 0.19 -2.24 15 15 C -0.13 -3.45 9.98 22.37 0.22 -3.23 15 16 C 0.13 3.63 6.70 22.51 0.15 3.79 15 17 O -0.48 -10.94 12.96 -92.68 -1.20 -12.15 15 18 C -0.11 -3.75 6.34 22.45 0.14 -3.61 15 19 Cl -0.05 -1.54 28.16 -2.72 -0.08 -1.62 15 20 C 0.09 3.57 7.22 22.38 0.16 3.73 15 21 F -0.14 -6.54 15.76 44.97 0.71 -5.83 15 22 H 0.26 15.37 6.25 -92.71 -0.58 14.79 15 23 H 0.00 0.03 7.60 -2.38 -0.02 0.01 15 24 H 0.07 2.73 7.20 -2.39 -0.02 2.72 15 25 H 0.33 12.06 8.99 -89.69 -0.81 11.25 15 26 H 0.34 9.97 9.08 -89.70 -0.81 9.16 15 27 H 0.14 4.66 7.52 -2.91 -0.02 4.64 15 28 H 0.17 3.37 8.06 -2.91 -0.02 3.35 15 29 H 0.41 5.11 9.06 -74.06 -0.67 4.44 15 Total: -1.00 -64.47 272.67 1.10 -63.38 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.87 Total: 20.96 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 1.93 Total: -28.89 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.45 Total: -86.47 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.20 Total: -12.15 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.71 Total: -5.83 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.61 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -64.47 1.10 -63.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360481.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.582 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds