Wall clock time and date at job start Mon Mar 30 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48494 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47163 * 299.99890 * 3 2 1 6 6 H 1.48506 * 109.47252 * 59.99636 * 3 2 1 7 7 C 1.37873 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99699 * 186.74403 * 7 2 1 9 9 C 1.50696 * 120.00000 * 6.75110 * 7 2 1 10 10 H 1.08997 * 109.47311 * 328.98177 * 9 7 2 11 11 C 1.53008 * 109.46873 * 208.98717 * 9 7 2 12 12 N 1.46891 * 109.47326 * 65.34149 * 11 9 7 13 13 C 1.50700 * 109.47405 * 88.98806 * 9 7 2 14 14 C 1.38249 * 119.95289 * 59.99667 * 13 9 7 15 15 C 1.38159 * 120.09464 * 179.97438 * 14 13 9 16 16 C 1.38736 * 120.00575 * 0.02562 * 15 14 13 17 17 O 1.35926 * 120.04427 * 179.97438 * 16 15 14 18 18 C 1.38759 * 119.90451 * 0.02562 * 16 15 14 19 19 Cl 1.73603 * 120.04260 * 180.02562 * 18 16 15 20 20 C 1.38460 * 119.90360 * 359.69964 * 18 16 15 21 21 F 1.35106 * 120.00369 * 180.31998 * 20 18 16 22 22 H 0.96998 * 120.00324 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47094 * 185.34214 * 11 9 7 24 24 H 1.08999 * 109.46784 * 305.34063 * 11 9 7 25 25 H 1.00899 * 111.00241 * 56.04459 * 12 11 9 26 26 H 1.00902 * 111.00032 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.95511 * 0.02562 * 14 13 9 28 28 H 1.07999 * 119.99393 * 180.02562 * 15 14 13 29 29 H 0.96692 * 113.99747 * 90.00216 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0789 -1.1971 0.1104 9 6 1.2589 -2.4946 -0.1523 10 1 0.2651 -2.3973 0.2848 11 6 2.0244 -3.6086 0.5647 12 7 2.0364 -3.3432 2.0094 13 6 1.1333 -2.8328 -1.6155 14 6 2.2694 -3.0061 -2.3839 15 6 2.1576 -3.3167 -3.7255 16 6 0.9040 -3.4546 -4.3036 17 8 0.7932 -3.7596 -5.6236 18 6 -0.2364 -3.2796 -3.5327 19 17 -1.8068 -3.4519 -4.2523 20 6 -0.1199 -2.9740 -2.1873 21 9 -1.2289 -2.8095 -1.4334 22 1 -0.4850 0.8400 -0.0004 23 1 1.5368 -4.5649 0.3750 24 1 3.0485 -3.6430 0.1931 25 1 1.0980 -3.2425 2.3663 26 1 2.5368 -4.0652 2.5056 27 1 3.2457 -2.8994 -1.9347 28 1 3.0462 -3.4522 -4.3241 29 1 0.7641 -4.7086 -5.8068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260360482.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:03 Heat of formation + Delta-G solvation = -74.839990 kcal Electronic energy + Delta-G solvation = -17398.345483 eV Core-core repulsion = 14261.749258 eV Total energy + Delta-G solvation = -3136.596226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.05254 -39.26768 -36.84693 -36.13658 -34.63703 -32.34888 -30.33382 -29.88169 -26.85858 -24.26477 -22.69518 -21.99167 -19.88974 -18.35832 -16.87545 -16.19467 -16.01289 -15.55560 -14.97599 -14.66254 -14.45169 -14.12534 -13.72289 -13.26325 -13.10131 -12.52367 -12.22423 -12.04024 -11.53955 -11.28694 -11.02303 -10.91400 -10.70315 -10.55223 -10.50413 -10.27290 -9.57485 -9.19808 -8.48616 -8.18175 -7.86959 -7.71191 -6.05026 -4.05940 1.51171 1.63849 2.45339 3.31192 3.39602 3.42557 3.95526 4.26229 4.43459 5.02669 5.13608 5.30961 5.48041 5.62715 5.83132 6.02343 6.14110 6.18809 6.39125 6.58116 6.65284 6.86329 6.94226 7.29767 7.64258 7.79723 7.87170 7.95433 8.21739 8.29464 8.97119 9.54983 11.02856 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.007902 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.055489 B = 3542.740010 C = 3748.490535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.062 3.938 10 H 0.073 0.927 11 C 0.082 3.918 12 N -0.831 5.831 13 C -0.052 4.052 14 C -0.071 4.071 15 C -0.150 4.150 16 C 0.103 3.897 17 O -0.487 6.487 18 C -0.104 4.104 19 Cl -0.064 7.064 20 C 0.121 3.879 21 F -0.118 7.118 22 H 0.262 0.738 23 H -0.004 1.004 24 H 0.057 0.943 25 H 0.337 0.663 26 H 0.321 0.679 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 -9.612 -5.492 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.043 3.957 10 H 0.091 0.909 11 C -0.049 4.049 12 N -0.359 5.359 13 C -0.055 4.055 14 C -0.090 4.090 15 C -0.169 4.169 16 C 0.057 3.943 17 O -0.296 6.296 18 C -0.132 4.132 19 Cl -0.035 7.035 20 C 0.100 3.900 21 F -0.096 7.096 22 H 0.071 0.929 23 H 0.014 0.986 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.132 0.868 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.721 -8.206 -5.788 10.189 hybrid contribution -0.543 -0.266 -0.027 0.606 sum 1.178 -8.473 -5.815 10.343 Atomic orbital electron populations 1.69951 1.05880 1.26763 1.49045 1.25013 0.94839 0.99374 0.94641 0.86553 0.80281 0.83836 0.77474 1.19613 1.21176 1.21040 1.20781 0.93446 0.88861 1.49017 0.92042 1.18044 0.99643 0.93520 0.84493 0.90917 1.21811 0.99572 0.95032 0.88474 1.58453 1.21945 1.51624 1.03882 1.21030 0.89403 0.93269 1.01793 1.20864 0.99191 0.96805 0.92104 1.21294 0.95917 1.04170 0.95516 1.17702 0.90237 1.03132 0.83197 1.84869 1.95833 1.28953 1.19920 1.21424 0.87044 1.12156 0.92600 1.98324 1.25445 1.96305 1.83443 1.17203 0.84101 1.02055 0.86598 1.91523 1.50253 1.92557 1.75247 0.92853 0.98575 0.92407 0.85044 0.86839 0.84489 0.85037 0.76241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.96 12.85 55.43 0.71 -24.24 15 2 C 0.06 1.74 5.45 -17.82 -0.10 1.65 15 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 7 C -0.48 -12.42 7.66 -34.44 -0.26 -12.68 15 8 H 0.06 1.59 7.82 -52.49 -0.41 1.17 15 9 C 0.06 1.43 2.15 -92.92 -0.20 1.23 15 10 H 0.07 1.91 6.37 -51.93 -0.33 1.58 15 11 C 0.08 1.58 5.89 -3.82 -0.02 1.56 15 12 N -0.83 -15.20 9.35 -10.37 -0.10 -15.30 15 13 C -0.05 -1.12 4.78 -104.53 -0.50 -1.62 15 14 C -0.07 -1.30 8.86 -39.61 -0.35 -1.66 15 15 C -0.15 -2.42 9.98 -39.43 -0.39 -2.82 15 16 C 0.10 1.74 6.70 -39.20 -0.26 1.48 15 17 O -0.49 -6.98 12.96 -19.51 -0.25 -7.23 15 18 C -0.10 -2.00 6.34 -39.31 -0.25 -2.24 15 19 Cl -0.06 -1.12 28.16 -51.86 -1.46 -2.58 15 20 C 0.12 2.62 7.22 -39.42 -0.28 2.33 15 21 F -0.12 -2.75 15.76 2.25 0.04 -2.72 15 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 23 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 15 24 H 0.06 1.07 7.58 -51.93 -0.39 0.68 15 25 H 0.34 6.14 8.99 -39.29 -0.35 5.78 15 26 H 0.32 4.75 9.08 -39.29 -0.36 4.40 15 27 H 0.14 2.32 7.63 -52.49 -0.40 1.92 15 28 H 0.13 1.72 8.06 -52.49 -0.42 1.30 15 29 H 0.38 3.52 9.06 45.56 0.41 3.94 15 LS Contribution 276.03 15.07 4.16 4.16 Total: -1.00 -29.80 276.03 -6.36 -36.16 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -1.81 Total: 8.32 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.62 Total: -12.78 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.62 Total: -39.54 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.25 Total: -7.23 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.46 Total: -2.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.80 -6.36 -36.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360482.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.682 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds