Wall clock time and date at job start Mon Mar 30 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48494 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47163 * 299.99890 * 3 2 1 6 6 H 1.48506 * 109.47252 * 59.99636 * 3 2 1 7 7 C 1.37873 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99699 * 186.74403 * 7 2 1 9 9 C 1.50696 * 120.00000 * 6.75110 * 7 2 1 10 10 H 1.08997 * 109.47311 * 328.98177 * 9 7 2 11 11 C 1.53008 * 109.46873 * 208.98717 * 9 7 2 12 12 N 1.46891 * 109.47326 * 65.34149 * 11 9 7 13 13 C 1.50700 * 109.47405 * 88.98806 * 9 7 2 14 14 C 1.38249 * 119.95289 * 59.99667 * 13 9 7 15 15 C 1.38159 * 120.09464 * 179.97438 * 14 13 9 16 16 C 1.38736 * 120.00575 * 0.02562 * 15 14 13 17 17 O 1.35926 * 120.04427 * 179.97438 * 16 15 14 18 18 C 1.38759 * 119.90451 * 0.02562 * 16 15 14 19 19 Cl 1.73603 * 120.04260 * 180.02562 * 18 16 15 20 20 C 1.38460 * 119.90360 * 359.69964 * 18 16 15 21 21 F 1.35106 * 120.00369 * 180.31998 * 20 18 16 22 22 H 0.96998 * 120.00324 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47094 * 185.34214 * 11 9 7 24 24 H 1.08999 * 109.46784 * 305.34063 * 11 9 7 25 25 H 1.00899 * 111.00241 * 56.04459 * 12 11 9 26 26 H 1.00902 * 111.00032 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.95511 * 0.02562 * 14 13 9 28 28 H 1.07999 * 119.99393 * 180.02562 * 15 14 13 29 29 H 0.96692 * 113.99747 * 90.00216 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0789 -1.1971 0.1104 9 6 1.2589 -2.4946 -0.1523 10 1 0.2651 -2.3973 0.2848 11 6 2.0244 -3.6086 0.5647 12 7 2.0364 -3.3432 2.0094 13 6 1.1333 -2.8328 -1.6155 14 6 2.2694 -3.0061 -2.3839 15 6 2.1576 -3.3167 -3.7255 16 6 0.9040 -3.4546 -4.3036 17 8 0.7932 -3.7596 -5.6236 18 6 -0.2364 -3.2796 -3.5327 19 17 -1.8068 -3.4519 -4.2523 20 6 -0.1199 -2.9740 -2.1873 21 9 -1.2289 -2.8095 -1.4334 22 1 -0.4850 0.8400 -0.0004 23 1 1.5368 -4.5649 0.3750 24 1 3.0485 -3.6430 0.1931 25 1 1.0980 -3.2425 2.3663 26 1 2.5368 -4.0652 2.5056 27 1 3.2457 -2.8994 -1.9347 28 1 3.0462 -3.4522 -4.3241 29 1 0.7641 -4.7086 -5.8068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260360482.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:03 Heat of formation + Delta-G solvation = -96.678282 kcal Electronic energy + Delta-G solvation = -17399.292463 eV Core-core repulsion = 14261.749258 eV Total energy + Delta-G solvation = -3137.543205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.72509 -40.64665 -38.26630 -37.52259 -36.15918 -34.20379 -31.90292 -31.31617 -28.50326 -26.09045 -24.14866 -23.44140 -21.53122 -19.68166 -18.66372 -17.79071 -17.45143 -17.02272 -16.66152 -16.45626 -15.95946 -15.55434 -15.30447 -14.74095 -14.58972 -14.10376 -14.04548 -13.49021 -13.02787 -12.95898 -12.64024 -12.58766 -12.42852 -12.22100 -11.99949 -11.64441 -11.32609 -11.05149 -10.50861 -9.62643 -9.33729 -9.21562 -8.05151 -6.10604 0.07023 0.21576 1.02895 1.42248 1.45589 1.54999 2.45545 2.56200 2.94513 3.25232 3.62211 3.88551 4.00829 4.19953 4.43085 4.51691 4.65602 4.77496 4.96502 5.08822 5.16843 5.35045 5.42825 5.78299 5.80649 5.94032 6.29007 6.53541 6.77830 6.89870 6.99742 7.52893 9.01796 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.007902 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.055489 B = 3542.740010 C = 3748.490535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.260 1.260 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.478 4.478 8 H 0.060 0.940 9 C 0.063 3.937 10 H 0.031 0.969 11 C 0.089 3.911 12 N -0.843 5.843 13 C -0.078 4.078 14 C -0.070 4.070 15 C -0.133 4.133 16 C 0.121 3.879 17 O -0.486 6.486 18 C -0.118 4.118 19 Cl -0.056 7.056 20 C 0.090 3.910 21 F -0.140 7.140 22 H 0.255 0.745 23 H 0.009 0.991 24 H 0.070 0.930 25 H 0.335 0.665 26 H 0.342 0.658 27 H 0.152 0.848 28 H 0.174 0.826 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -10.571 -7.097 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.183 1.183 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.044 3.956 10 H 0.049 0.951 11 C -0.041 4.041 12 N -0.372 5.372 13 C -0.080 4.080 14 C -0.088 4.088 15 C -0.152 4.152 16 C 0.075 3.925 17 O -0.299 6.299 18 C -0.146 4.146 19 Cl -0.027 7.027 20 C 0.069 3.931 21 F -0.119 7.119 22 H 0.064 0.936 23 H 0.027 0.973 24 H 0.088 0.912 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.170 0.830 28 H 0.191 0.809 29 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.786 -9.210 -7.398 12.405 hybrid contribution -1.160 -0.103 0.363 1.219 sum 2.626 -9.313 -7.036 11.963 Atomic orbital electron populations 1.70104 1.07186 1.26687 1.51652 1.25677 0.95385 1.02237 0.95287 0.85727 0.79784 0.80673 0.76814 1.18331 1.21735 1.21444 1.21042 0.93330 0.89948 1.47251 0.92151 1.17888 0.97514 0.93971 0.86247 0.95063 1.21675 0.99656 0.94173 0.88639 1.58413 1.22163 1.52889 1.03759 1.20885 0.90529 0.95701 1.00899 1.21055 0.98628 0.96140 0.92987 1.21655 0.96994 1.01741 0.94762 1.17799 0.89715 1.01230 0.83788 1.84807 1.95631 1.31537 1.17938 1.21599 0.88365 1.12522 0.92097 1.98319 1.25127 1.96260 1.83003 1.17527 0.83754 1.04061 0.87718 1.91456 1.51324 1.93065 1.76023 0.93596 0.97323 0.91170 0.85302 0.84507 0.83023 0.80889 0.73052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.79 12.85 21.45 0.28 -53.52 15 2 C 0.01 0.70 5.45 84.65 0.46 1.17 15 3 Si 0.94 43.84 29.54 68.60 2.03 45.87 15 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 15 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 15 7 C -0.48 -24.52 7.66 25.60 0.20 -24.32 15 8 H 0.06 3.05 7.82 -2.91 -0.02 3.03 15 9 C 0.06 2.93 2.15 -12.28 -0.03 2.90 15 10 H 0.03 1.71 6.37 -2.39 -0.02 1.69 15 11 C 0.09 3.36 5.89 86.31 0.51 3.87 15 12 N -0.84 -30.22 9.35 -186.72 -1.75 -31.97 15 13 C -0.08 -3.30 4.78 -19.81 -0.09 -3.39 15 14 C -0.07 -2.38 8.86 22.25 0.20 -2.19 15 15 C -0.13 -3.76 9.98 22.37 0.22 -3.53 15 16 C 0.12 3.70 6.70 22.51 0.15 3.85 15 17 O -0.49 -11.93 12.96 -92.72 -1.20 -13.13 15 18 C -0.12 -4.37 6.34 22.45 0.14 -4.23 15 19 Cl -0.06 -1.90 28.16 -2.72 -0.08 -1.98 15 20 C 0.09 3.91 7.22 22.38 0.16 4.07 15 21 F -0.14 -6.86 15.76 44.97 0.71 -6.15 15 22 H 0.26 14.58 8.31 -92.71 -0.77 13.81 15 23 H 0.01 0.30 8.14 -2.39 -0.02 0.29 15 24 H 0.07 2.45 7.58 -2.39 -0.02 2.43 15 25 H 0.34 12.32 8.99 -89.69 -0.81 11.51 15 26 H 0.34 9.61 9.08 -89.69 -0.81 8.80 15 27 H 0.15 4.66 7.63 -2.91 -0.02 4.63 15 28 H 0.17 3.48 8.06 -2.91 -0.02 3.46 15 29 H 0.41 5.65 9.06 -74.06 -0.67 4.98 15 Total: -1.00 -65.23 276.03 0.84 -64.38 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -1.06 Total: 18.28 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 1.92 Total: -21.80 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.47 Total: -85.48 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.20 Total: -13.13 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.71 Total: -6.15 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -65.23 0.84 -64.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360482.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.294 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds