Wall clock time and date at job start Mon Mar 30 2020 06:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47125 * 55.00088 * 10 9 7 12 12 N 1.46904 * 109.47145 * 295.00022 * 10 9 7 13 13 C 1.50697 * 109.47354 * 174.99865 * 10 9 7 14 14 C 1.38195 * 120.00002 * 99.99454 * 13 10 9 15 15 C 1.38287 * 120.06759 * 180.02562 * 14 13 10 16 16 Cl 1.73606 * 119.96826 * 180.02562 * 15 14 13 17 17 C 1.38606 * 120.06405 * 359.97438 * 15 14 13 18 18 F 1.35106 * 120.00148 * 180.02562 * 17 15 14 19 19 C 1.38331 * 119.99733 * 0.02562 * 17 15 14 20 20 C 1.38707 * 120.00127 * 279.73028 * 13 10 9 21 21 O 1.35926 * 120.02685 * 359.96906 * 20 13 10 22 22 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 24 24 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 25 25 H 1.00892 * 111.00190 * 176.04744 * 12 10 9 26 26 H 1.00904 * 110.99623 * 299.99964 * 12 10 9 27 27 H 1.08003 * 119.95884 * 0.02562 * 14 13 10 28 28 H 1.07996 * 120.03308 * 179.97438 * 19 17 15 29 29 H 0.96704 * 113.99676 * 90.01002 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9253 -3.5531 0.8581 12 7 3.0138 -3.6573 -1.2384 13 6 1.4950 -4.9633 0.1373 14 6 1.2581 -5.7339 -0.9852 15 6 0.5696 -6.9279 -0.8732 16 17 0.2739 -7.8942 -2.2849 17 6 0.1162 -7.3545 0.3652 18 9 -0.5560 -8.5215 0.4732 19 6 0.3518 -6.5853 1.4905 20 6 1.0473 -5.3903 1.3787 21 8 1.2852 -4.6358 2.4840 22 1 -0.4851 -0.8400 -0.0004 23 1 0.6205 -2.5547 0.8933 24 1 0.6280 -2.5591 -0.8867 25 1 3.7214 -4.3765 -1.2309 26 1 2.4051 -3.7572 -2.0369 27 1 1.6111 -5.4031 -1.9508 28 1 -0.0016 -6.9169 2.4556 29 1 0.5916 -3.9899 2.6760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260374437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:41 Heat of formation + Delta-G solvation = -78.873180 kcal Electronic energy + Delta-G solvation = -16962.545698 eV Core-core repulsion = 13825.774580 eV Total energy + Delta-G solvation = -3136.771118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.05881 -40.09313 -37.16144 -36.33071 -35.39303 -32.78768 -30.29013 -29.44025 -28.05491 -24.42658 -23.00151 -22.38323 -20.28049 -18.73895 -17.23134 -17.00479 -16.69401 -15.95948 -15.76719 -15.23910 -14.79743 -14.24117 -14.02652 -13.69846 -13.23289 -13.15979 -12.99665 -12.18494 -11.79518 -11.73299 -11.17456 -11.13714 -10.94553 -10.75156 -10.48975 -10.15111 -10.01947 -9.04664 -8.70271 -8.33787 -8.32768 -8.16843 -6.32708 -4.00030 0.79812 0.94500 1.88226 3.19456 3.47561 3.50269 3.66464 3.81558 4.26209 4.54046 4.58836 4.81770 4.95274 5.19248 5.40342 5.45834 5.57195 5.74431 5.83491 6.03933 6.19496 6.44554 6.57381 7.04362 7.29876 7.62330 7.71407 7.93878 8.22026 8.55911 8.91309 9.68702 11.07172 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.005361 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.105601 B = 5221.419252 C = 5624.488136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 1.072 2.928 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.575 4.575 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.144 3.856 11 H 0.094 0.906 12 N -0.820 5.820 13 C -0.123 4.123 14 C -0.079 4.079 15 C -0.077 4.077 16 Cl -0.056 7.056 17 C 0.109 3.891 18 F -0.129 7.129 19 C -0.170 4.170 20 C 0.150 3.850 21 O -0.486 6.486 22 H 0.265 0.735 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.327 0.673 26 H 0.334 0.666 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 -14.272 0.197 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.192 4.192 3 Si 0.901 3.099 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.614 4.614 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.032 3.968 11 H 0.112 0.888 12 N -0.348 5.348 13 C -0.126 4.126 14 C -0.098 4.098 15 C -0.105 4.105 16 Cl -0.027 7.027 17 C 0.089 3.911 18 F -0.107 7.107 19 C -0.189 4.189 20 C 0.104 3.896 21 O -0.298 6.298 22 H 0.075 0.925 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.138 0.862 26 H 0.149 0.851 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.195 -12.313 0.317 12.375 hybrid contribution -0.891 -2.794 -0.277 2.946 sum 0.304 -15.107 0.040 15.110 Atomic orbital electron populations 1.70790 1.06918 1.30222 1.47770 1.25825 0.96500 1.02733 0.94170 0.83483 0.74632 0.75076 0.76670 1.21613 1.21314 1.21494 1.21939 0.94786 0.90758 1.53884 0.92383 1.19209 0.93360 0.92571 0.95790 1.20639 0.94687 0.88443 0.93044 0.88819 1.58742 1.17715 1.54542 1.03774 1.21929 0.99765 0.99449 0.91466 1.20702 0.97594 0.91640 0.99827 1.20891 1.05880 0.96288 0.87423 1.98372 1.94956 1.70495 1.38843 1.17029 0.97477 0.84107 0.92483 1.91525 1.77657 1.44839 1.96724 1.21341 1.02612 0.96614 0.98382 1.18000 0.94765 0.90544 0.86279 1.84739 1.49877 1.52881 1.42313 0.92496 0.97494 0.97470 0.86171 0.85144 0.83890 0.83407 0.73920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 13.65 55.43 0.76 -26.56 15 2 C 0.01 0.28 5.46 -17.82 -0.10 0.19 15 3 Si 1.07 25.16 29.90 -169.99 -5.08 20.08 15 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.29 -6.48 7.11 56.52 0.40 -6.07 15 7 C -0.58 -15.58 8.84 -34.44 -0.30 -15.89 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.03 0.65 3.91 -27.88 -0.11 0.54 15 10 C 0.14 2.70 2.59 -68.86 -0.18 2.53 15 11 H 0.09 1.89 7.84 -51.93 -0.41 1.48 15 12 N -0.82 -14.16 8.42 -5.65 -0.05 -14.20 15 13 C -0.12 -1.96 5.09 -104.47 -0.53 -2.49 15 14 C -0.08 -1.13 9.02 -39.58 -0.36 -1.49 15 15 C -0.08 -1.08 6.33 -39.43 -0.25 -1.33 15 16 Cl -0.06 -0.71 28.61 -51.86 -1.48 -2.19 15 17 C 0.11 1.52 7.27 -39.41 -0.29 1.24 15 18 F -0.13 -1.78 16.83 2.25 0.04 -1.74 15 19 C -0.17 -2.28 9.97 -39.37 -0.39 -2.67 15 20 C 0.15 2.25 6.67 -39.23 -0.26 1.99 15 21 O -0.49 -7.15 12.67 -19.51 -0.25 -7.39 15 22 H 0.26 7.78 7.22 -40.82 -0.29 7.48 15 23 H 0.01 0.17 7.53 -51.93 -0.39 -0.23 15 24 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 15 25 H 0.33 4.71 9.06 -39.30 -0.36 4.35 15 26 H 0.33 5.44 7.29 -39.29 -0.29 5.16 15 27 H 0.14 1.88 6.24 -52.48 -0.33 1.55 15 28 H 0.15 1.66 8.06 -52.49 -0.42 1.23 15 29 H 0.40 4.82 8.65 45.56 0.39 5.21 15 LS Contribution 274.20 15.07 4.13 4.13 Total: -1.00 -30.27 274.20 -6.41 -36.69 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -1.71 Total: 8.59 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.77 Total: -17.39 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.71 Total: -40.77 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.25 Total: -7.39 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.27 -6.41 -36.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.186 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds