Wall clock time and date at job start Mon Mar 30 2020 06:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47125 * 55.00088 * 10 9 7 12 12 N 1.46904 * 109.47145 * 295.00022 * 10 9 7 13 13 C 1.50697 * 109.47354 * 174.99865 * 10 9 7 14 14 C 1.38195 * 120.00002 * 99.99454 * 13 10 9 15 15 C 1.38287 * 120.06759 * 180.02562 * 14 13 10 16 16 Cl 1.73606 * 119.96826 * 180.02562 * 15 14 13 17 17 C 1.38606 * 120.06405 * 359.97438 * 15 14 13 18 18 F 1.35106 * 120.00148 * 180.02562 * 17 15 14 19 19 C 1.38331 * 119.99733 * 0.02562 * 17 15 14 20 20 C 1.38707 * 120.00127 * 279.73028 * 13 10 9 21 21 O 1.35926 * 120.02685 * 359.96906 * 20 13 10 22 22 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 24 24 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 25 25 H 1.00892 * 111.00190 * 176.04744 * 12 10 9 26 26 H 1.00904 * 110.99623 * 299.99964 * 12 10 9 27 27 H 1.08003 * 119.95884 * 0.02562 * 14 13 10 28 28 H 1.07996 * 120.03308 * 179.97438 * 19 17 15 29 29 H 0.96704 * 113.99676 * 90.01002 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9253 -3.5531 0.8581 12 7 3.0138 -3.6573 -1.2384 13 6 1.4950 -4.9633 0.1373 14 6 1.2581 -5.7339 -0.9852 15 6 0.5696 -6.9279 -0.8732 16 17 0.2739 -7.8942 -2.2849 17 6 0.1162 -7.3545 0.3652 18 9 -0.5560 -8.5215 0.4732 19 6 0.3518 -6.5853 1.4905 20 6 1.0473 -5.3903 1.3787 21 8 1.2852 -4.6358 2.4840 22 1 -0.4851 -0.8400 -0.0004 23 1 0.6205 -2.5547 0.8933 24 1 0.6280 -2.5591 -0.8867 25 1 3.7214 -4.3765 -1.2309 26 1 2.4051 -3.7572 -2.0369 27 1 1.6111 -5.4031 -1.9508 28 1 -0.0016 -6.9169 2.4556 29 1 0.5916 -3.9899 2.6760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:41 Heat of formation + Delta-G solvation = -100.127498 kcal Electronic energy + Delta-G solvation = -16963.467355 eV Core-core repulsion = 13825.774580 eV Total energy + Delta-G solvation = -3137.692774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.16271 -41.28411 -38.25911 -37.59930 -36.77496 -34.74975 -31.45787 -30.68974 -29.81853 -26.11686 -24.35309 -23.83558 -21.74387 -19.87650 -18.96691 -18.25318 -18.02098 -17.16056 -16.96145 -16.69844 -16.01602 -15.61185 -15.44953 -15.15739 -14.84187 -14.57050 -14.12634 -13.67577 -13.41480 -13.22488 -12.74641 -12.51018 -12.31246 -12.14316 -11.92991 -11.91167 -11.72012 -10.70888 -10.46221 -10.14125 -9.61460 -9.55365 -8.54865 -6.22014 -0.34221 -0.18599 0.79939 1.58030 1.65778 1.83629 2.05172 2.63269 2.70195 3.14733 3.26558 3.43609 3.58919 3.71806 4.00110 4.28050 4.40815 4.47544 4.59474 4.64957 4.82623 5.06453 5.15565 5.34618 5.48420 6.09341 6.31798 6.36584 6.56452 6.65676 6.75922 7.53904 8.86054 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.005361 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.105601 B = 5221.419252 C = 5624.488136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.041 4.041 3 Si 1.115 2.885 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.580 4.580 8 H 0.050 0.950 9 C 0.032 3.968 10 C 0.161 3.839 11 H 0.078 0.922 12 N -0.830 5.830 13 C -0.139 4.139 14 C -0.073 4.073 15 C -0.082 4.082 16 Cl -0.044 7.044 17 C 0.111 3.889 18 F -0.126 7.126 19 C -0.161 4.161 20 C 0.145 3.855 21 O -0.495 6.495 22 H 0.254 0.746 23 H 0.001 0.999 24 H -0.013 1.013 25 H 0.345 0.655 26 H 0.340 0.660 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -15.094 0.169 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.238 4.238 3 Si 0.939 3.061 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.619 4.619 8 H 0.068 0.932 9 C -0.005 4.005 10 C 0.048 3.952 11 H 0.096 0.904 12 N -0.360 5.360 13 C -0.142 4.142 14 C -0.092 4.092 15 C -0.110 4.110 16 Cl -0.015 7.015 17 C 0.091 3.909 18 F -0.105 7.105 19 C -0.181 4.181 20 C 0.099 3.901 21 O -0.308 6.308 22 H 0.064 0.936 23 H 0.019 0.981 24 H 0.005 0.995 25 H 0.159 0.841 26 H 0.155 0.845 27 H 0.171 0.829 28 H 0.190 0.810 29 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.707 -13.165 0.285 13.278 hybrid contribution -1.061 -2.634 -0.278 2.853 sum 0.647 -15.799 0.007 15.812 Atomic orbital electron populations 1.70911 1.07837 1.29658 1.50119 1.27145 0.96599 1.06360 0.93662 0.82925 0.74181 0.71699 0.77339 1.20508 1.21299 1.19756 1.22273 0.94620 0.92417 1.52568 0.93183 1.19070 0.93756 0.93337 0.94339 1.20098 0.93552 0.88305 0.93218 0.90366 1.58633 1.18243 1.55796 1.03368 1.21621 1.01115 0.98814 0.92685 1.20742 0.97182 0.91526 0.99737 1.20936 1.05713 0.96299 0.88036 1.98378 1.94850 1.70056 1.38177 1.17133 0.97073 0.84092 0.92622 1.91536 1.77548 1.44679 1.96715 1.21477 1.01646 0.95604 0.99341 1.18103 0.94873 0.91126 0.85979 1.84709 1.50647 1.53262 1.42206 0.93623 0.98129 0.99499 0.84147 0.84508 0.82857 0.81034 0.72823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.87 13.65 21.45 0.29 -56.57 15 2 C -0.04 -2.32 5.46 84.66 0.46 -1.86 15 3 Si 1.12 50.28 29.90 68.60 2.05 52.33 15 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 7 C -0.58 -31.60 8.84 25.60 0.23 -31.37 15 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 15 9 C 0.03 1.52 3.91 29.85 0.12 1.64 15 10 C 0.16 5.99 2.59 44.17 0.11 6.11 15 11 H 0.08 3.15 7.84 -2.39 -0.02 3.13 15 12 N -0.83 -27.99 8.42 -171.79 -1.45 -29.43 15 13 C -0.14 -4.32 5.09 -19.76 -0.10 -4.42 15 14 C -0.07 -2.00 9.02 22.27 0.20 -1.80 15 15 C -0.08 -2.15 6.33 22.37 0.14 -2.01 15 16 Cl -0.04 -1.03 28.61 -2.72 -0.08 -1.11 15 17 C 0.11 2.86 7.27 22.38 0.16 3.02 15 18 F -0.13 -3.19 16.83 44.97 0.76 -2.44 15 19 C -0.16 -3.99 9.97 22.41 0.22 -3.76 15 20 C 0.15 4.18 6.67 22.50 0.15 4.33 15 21 O -0.49 -14.15 12.67 -92.71 -1.17 -15.32 15 22 H 0.25 15.29 7.22 -92.71 -0.67 14.62 15 23 H 0.00 0.03 7.53 -2.39 -0.02 0.01 15 24 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 15 25 H 0.34 9.47 9.06 -89.70 -0.81 8.66 15 26 H 0.34 10.78 7.29 -89.69 -0.65 10.13 15 27 H 0.15 3.79 6.24 -2.91 -0.02 3.78 15 28 H 0.17 3.36 8.06 -2.91 -0.02 3.34 15 29 H 0.41 9.73 8.65 -74.05 -0.64 9.09 15 Total: -1.00 -63.45 274.20 1.32 -62.13 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -0.78 Total: 20.54 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 1.70 Total: -30.12 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.15 Total: -86.01 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.17 Total: -15.32 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.76 Total: -2.44 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -63.45 1.32 -62.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.002 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds