Wall clock time and date at job start Mon Mar 30 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38471 * 119.97017 * 2 1 4 4 F 1.35094 * 119.96694 * 0.26836 * 3 2 1 5 5 C 1.38438 * 120.06611 * 180.27953 * 3 2 1 6 6 C 1.38261 * 120.01796 * 359.97438 * 5 3 2 7 7 Cl 1.73602 * 120.02339 * 180.02562 * 6 5 3 8 8 C 1.38787 * 119.94960 * 0.02562 * 6 5 3 9 9 O 1.35973 * 120.03663 * 179.97438 * 8 6 5 10 10 C 1.38154 * 119.97699 * 180.27020 * 2 1 3 11 11 C 1.50696 * 120.01039 * 359.74388 * 10 2 1 12 12 H 1.09004 * 109.47118 * 12.26639 * 11 10 2 13 13 N 1.46898 * 109.47048 * 132.26447 * 11 10 2 14 14 C 1.50701 * 109.47329 * 252.26361 * 11 10 2 15 15 H 1.08001 * 119.99919 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99883 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00082 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99905 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47100 * 60.00684 * 18 16 14 20 20 H 1.48502 * 109.47143 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47177 * 300.00384 * 18 16 14 22 22 H 1.09000 * 109.47396 * 263.80116 * 1 2 3 23 23 H 1.08997 * 109.47458 * 23.80777 * 1 2 3 24 24 H 1.09003 * 109.46434 * 143.80542 * 1 2 3 25 25 H 1.08000 * 119.98869 * 179.97438 * 5 3 2 26 26 H 0.96702 * 113.99937 * 270.02505 * 9 8 6 27 27 H 1.00906 * 111.00022 * 296.04950 * 13 11 10 28 28 H 1.00903 * 111.00204 * 60.00332 * 13 11 10 29 29 H 0.97000 * 119.99849 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1996 0.0000 4 9 1.5220 2.3688 0.0055 5 6 3.5831 1.2019 -0.0058 6 6 4.2767 0.0059 -0.0112 7 17 6.0127 0.0086 -0.0178 8 6 3.5841 -1.1968 -0.0112 9 8 4.2645 -2.3741 -0.0169 10 6 2.1972 -1.1967 -0.0056 11 6 1.4435 -2.5016 -0.0060 12 1 0.3913 -2.3134 -0.2198 13 7 2.0012 -3.3890 -1.0353 14 6 1.5722 -3.1565 1.3452 15 1 2.1425 -2.6756 2.1262 16 6 0.9611 -4.3690 1.5846 17 7 0.2663 -4.9544 0.6337 18 14 1.1201 -5.1805 3.2597 19 1 0.5563 -4.2831 4.2999 20 1 0.3774 -6.4664 3.2593 21 1 2.5534 -5.4372 3.5513 22 1 -0.3634 -0.1110 1.0216 23 1 -0.3634 0.9402 -0.4148 24 1 -0.3632 -0.8294 -0.6069 25 1 4.1213 2.1382 -0.0063 26 1 4.4579 -2.7122 -0.9020 27 1 1.8689 -3.0011 -1.9574 28 1 2.9765 -3.5788 -0.8593 29 1 -0.1633 -5.8076 0.8020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260386156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:18 Heat of formation + Delta-G solvation = -64.640565 kcal Electronic energy + Delta-G solvation = -17518.804545 eV Core-core repulsion = 14382.650600 eV Total energy + Delta-G solvation = -3136.153945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.71386 -39.79250 -36.48688 -36.40236 -34.48510 -32.12598 -31.13189 -28.94452 -26.57009 -25.96213 -23.26700 -21.48946 -20.42673 -17.78950 -17.17953 -17.05487 -16.20348 -15.51833 -14.97020 -14.57820 -14.45979 -13.96254 -13.52833 -13.29678 -12.99215 -12.80443 -12.53514 -12.31433 -11.93896 -11.49384 -11.12210 -10.93888 -10.84500 -10.74321 -10.60806 -10.22240 -9.85168 -9.21564 -8.42595 -8.27082 -8.08283 -7.20938 -5.90594 -4.03094 1.20703 1.38089 2.21835 3.36308 3.40248 3.44008 3.62283 4.38336 4.47547 4.52723 4.94461 5.14452 5.34393 5.46401 5.69154 5.77552 5.99246 6.02046 6.21166 6.28408 6.44287 6.47695 6.58840 6.99316 7.36411 7.88850 7.94363 8.09478 8.52522 8.91092 9.08119 9.63924 11.13959 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.008125 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.954239 B = 3445.366720 C = 4186.494415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C 0.093 3.907 4 F -0.139 7.139 5 C -0.155 4.155 6 C -0.046 4.046 7 Cl -0.064 7.064 8 C 0.114 3.886 9 O -0.463 6.463 10 C -0.066 4.066 11 C 0.260 3.740 12 H 0.060 0.940 13 N -0.810 5.810 14 C -0.519 4.519 15 H 0.053 0.947 16 C 0.085 3.915 17 N -0.849 5.849 18 Si 0.886 3.114 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.379 0.621 27 H 0.294 0.706 28 H 0.323 0.677 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 9.785 -4.198 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C 0.074 3.926 4 F -0.117 7.117 5 C -0.175 4.175 6 C -0.073 4.073 7 Cl -0.035 7.035 8 C 0.067 3.933 9 O -0.272 6.272 10 C -0.070 4.070 11 C 0.150 3.850 12 H 0.078 0.922 13 N -0.342 5.342 14 C -0.558 4.558 15 H 0.071 0.929 16 C -0.122 4.122 17 N -0.484 5.484 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.202 1.202 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.157 0.843 26 H 0.236 0.764 27 H 0.105 0.895 28 H 0.140 0.860 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.691 9.141 -3.388 10.819 hybrid contribution 1.015 0.590 0.297 1.211 sum 5.706 9.731 -3.091 11.697 Atomic orbital electron populations 1.20767 0.89694 1.02654 1.03748 1.19896 0.97693 0.90675 1.02002 1.17304 0.89108 0.81109 1.05115 1.91447 1.80093 1.46044 1.94139 1.20574 0.92278 0.97768 1.06863 1.21070 0.84682 0.94073 1.07500 1.98342 1.09309 1.98898 1.96964 1.18041 0.89380 0.84151 1.01696 1.85037 1.75201 1.34756 1.32166 1.22025 0.92693 0.99224 0.93026 1.18328 0.93220 0.80652 0.92784 0.92201 1.59310 1.22335 1.50189 1.02336 1.20668 1.34168 1.05645 0.95272 0.92909 1.24889 0.94537 0.96754 0.96000 1.70079 1.31023 1.15940 1.31312 0.86792 0.78295 0.78670 0.84910 1.20419 1.21367 1.20244 0.90164 0.92064 0.89740 0.84297 0.76421 0.89525 0.85969 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.22 36.00 0.33 -1.50 15 2 C -0.10 -1.81 5.88 -104.57 -0.62 -2.42 15 3 C 0.09 1.54 7.24 -39.42 -0.29 1.25 15 4 F -0.14 -2.18 16.37 2.25 0.04 -2.14 15 5 C -0.16 -2.40 9.80 -39.50 -0.39 -2.79 15 6 C -0.05 -0.75 6.33 -39.37 -0.25 -1.00 15 7 Cl -0.06 -0.93 28.50 -51.86 -1.48 -2.40 15 8 C 0.11 2.09 6.45 -39.21 -0.25 1.84 15 9 O -0.46 -8.35 10.62 -19.66 -0.21 -8.56 15 10 C -0.07 -1.30 4.89 -104.49 -0.51 -1.81 15 11 C 0.26 5.94 2.54 -70.02 -0.18 5.76 15 12 H 0.06 1.46 5.57 -51.93 -0.29 1.17 15 13 N -0.81 -17.44 8.44 -6.65 -0.06 -17.50 15 14 C -0.52 -13.76 8.38 -34.44 -0.29 -14.05 15 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 15 16 C 0.08 2.30 5.39 -17.82 -0.10 2.21 15 17 N -0.85 -23.78 12.77 55.43 0.71 -23.07 15 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 15 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 22 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.06 0.86 7.46 -51.93 -0.39 0.48 15 24 H 0.08 1.42 6.25 -51.93 -0.32 1.09 15 25 H 0.14 1.81 8.06 -52.49 -0.42 1.39 15 26 H 0.38 5.27 7.75 45.56 0.35 5.62 15 27 H 0.29 5.53 9.06 -39.29 -0.36 5.18 15 28 H 0.32 6.53 5.35 -39.29 -0.21 6.32 15 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -28.97 267.38 -6.12 -35.09 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -1.60 Total: 10.86 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.53 Total: -12.52 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.65 Total: -40.57 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.21 Total: -8.56 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.48 Total: -2.40 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.97 -6.12 -35.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260386156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.548 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds