Wall clock time and date at job start Mon Mar 30 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38471 * 119.97017 * 2 1 4 4 F 1.35094 * 119.96694 * 0.26836 * 3 2 1 5 5 C 1.38438 * 120.06611 * 180.27953 * 3 2 1 6 6 C 1.38261 * 120.01796 * 359.97438 * 5 3 2 7 7 Cl 1.73602 * 120.02339 * 180.02562 * 6 5 3 8 8 C 1.38787 * 119.94960 * 0.02562 * 6 5 3 9 9 O 1.35973 * 120.03663 * 179.97438 * 8 6 5 10 10 C 1.38154 * 119.97699 * 180.27020 * 2 1 3 11 11 C 1.50696 * 120.01039 * 359.74388 * 10 2 1 12 12 H 1.09004 * 109.47118 * 12.26639 * 11 10 2 13 13 N 1.46898 * 109.47048 * 132.26447 * 11 10 2 14 14 C 1.50701 * 109.47329 * 252.26361 * 11 10 2 15 15 H 1.08001 * 119.99919 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99883 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00082 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99905 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47100 * 60.00684 * 18 16 14 20 20 H 1.48502 * 109.47143 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47177 * 300.00384 * 18 16 14 22 22 H 1.09000 * 109.47396 * 263.80116 * 1 2 3 23 23 H 1.08997 * 109.47458 * 23.80777 * 1 2 3 24 24 H 1.09003 * 109.46434 * 143.80542 * 1 2 3 25 25 H 1.08000 * 119.98869 * 179.97438 * 5 3 2 26 26 H 0.96702 * 113.99937 * 270.02505 * 9 8 6 27 27 H 1.00906 * 111.00022 * 296.04950 * 13 11 10 28 28 H 1.00903 * 111.00204 * 60.00332 * 13 11 10 29 29 H 0.97000 * 119.99849 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1996 0.0000 4 9 1.5220 2.3688 0.0055 5 6 3.5831 1.2019 -0.0058 6 6 4.2767 0.0059 -0.0112 7 17 6.0127 0.0086 -0.0178 8 6 3.5841 -1.1968 -0.0112 9 8 4.2645 -2.3741 -0.0169 10 6 2.1972 -1.1967 -0.0056 11 6 1.4435 -2.5016 -0.0060 12 1 0.3913 -2.3134 -0.2198 13 7 2.0012 -3.3890 -1.0353 14 6 1.5722 -3.1565 1.3452 15 1 2.1425 -2.6756 2.1262 16 6 0.9611 -4.3690 1.5846 17 7 0.2663 -4.9544 0.6337 18 14 1.1201 -5.1805 3.2597 19 1 0.5563 -4.2831 4.2999 20 1 0.3774 -6.4664 3.2593 21 1 2.5534 -5.4372 3.5513 22 1 -0.3634 -0.1110 1.0216 23 1 -0.3634 0.9402 -0.4148 24 1 -0.3632 -0.8294 -0.6069 25 1 4.1213 2.1382 -0.0063 26 1 4.4579 -2.7122 -0.9020 27 1 1.8689 -3.0011 -1.9574 28 1 2.9765 -3.5788 -0.8593 29 1 -0.1633 -5.8076 0.8020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260386156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:18 Heat of formation + Delta-G solvation = -84.437841 kcal Electronic energy + Delta-G solvation = -17519.663020 eV Core-core repulsion = 14382.650600 eV Total energy + Delta-G solvation = -3137.012420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.98212 -41.18990 -37.79223 -37.72921 -36.15167 -33.81730 -32.77988 -30.38113 -28.03423 -27.73419 -24.88697 -22.86830 -21.98768 -19.17217 -18.80561 -18.41281 -17.89409 -16.83312 -16.55596 -16.28614 -15.96929 -15.44346 -14.83673 -14.79182 -14.45101 -14.41525 -13.99201 -13.77372 -13.36247 -13.03883 -12.82572 -12.61654 -12.49394 -12.15168 -12.04530 -11.88640 -11.47242 -11.07802 -10.47848 -9.71634 -9.41251 -8.87374 -7.95431 -6.12338 -0.12967 0.02981 0.96002 1.44215 1.45966 1.52322 2.24977 2.51516 3.07133 3.17799 3.31357 3.66859 3.79791 4.12589 4.34034 4.49959 4.51469 4.69668 4.73945 4.90005 5.01010 5.12181 5.16644 5.63478 5.66658 5.80340 6.18398 6.65734 6.70184 7.14704 7.31068 7.57139 9.07645 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.008125 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.954239 B = 3445.366720 C = 4186.494415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C 0.094 3.906 4 F -0.132 7.132 5 C -0.139 4.139 6 C -0.049 4.049 7 Cl -0.044 7.044 8 C 0.109 3.891 9 O -0.478 6.478 10 C -0.090 4.090 11 C 0.266 3.734 12 H 0.039 0.961 13 N -0.822 5.822 14 C -0.527 4.527 15 H 0.035 0.965 16 C 0.042 3.958 17 N -0.876 5.876 18 Si 0.937 3.063 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.280 1.280 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.169 0.831 26 H 0.395 0.605 27 H 0.311 0.689 28 H 0.329 0.671 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 11.098 -4.186 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C 0.074 3.926 4 F -0.110 7.110 5 C -0.158 4.158 6 C -0.076 4.076 7 Cl -0.015 7.015 8 C 0.063 3.937 9 O -0.289 6.289 10 C -0.094 4.094 11 C 0.156 3.844 12 H 0.057 0.943 13 N -0.355 5.355 14 C -0.566 4.566 15 H 0.053 0.947 16 C -0.162 4.162 17 N -0.512 5.512 18 Si 0.764 3.236 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.206 1.206 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.187 0.813 26 H 0.254 0.746 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.717 10.461 -3.383 12.392 hybrid contribution 0.777 0.265 0.260 0.861 sum 6.494 10.726 -3.123 12.922 Atomic orbital electron populations 1.20747 0.89116 1.03450 1.03280 1.20025 0.98341 0.90851 1.01781 1.17247 0.89520 0.80797 1.05009 1.91468 1.80058 1.45423 1.94062 1.20881 0.91893 0.98621 1.04419 1.21044 0.85873 0.93592 1.07090 1.98350 1.07412 1.98852 1.96837 1.18087 0.89050 0.84876 1.01697 1.84970 1.75097 1.35085 1.33755 1.21646 0.93369 0.98353 0.96007 1.17922 0.92793 0.82219 0.91423 0.94303 1.59081 1.22837 1.50587 1.02999 1.20897 1.33277 1.05760 0.96633 0.94694 1.25475 0.94596 0.97438 0.98642 1.70174 1.32096 1.16180 1.32715 0.85981 0.77873 0.77975 0.81805 1.20116 1.20909 1.20567 0.90849 0.89758 0.90795 0.81313 0.74619 0.87795 0.85264 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.54 9.22 71.23 0.66 -2.88 15 2 C -0.11 -3.78 5.88 -19.83 -0.12 -3.90 15 3 C 0.09 2.88 7.24 22.37 0.16 3.05 15 4 F -0.13 -3.77 16.37 44.97 0.74 -3.03 15 5 C -0.14 -3.87 9.80 22.32 0.22 -3.65 15 6 C -0.05 -1.48 6.33 22.41 0.14 -1.34 15 7 Cl -0.04 -1.15 28.50 -2.72 -0.08 -1.22 15 8 C 0.11 3.89 6.45 22.51 0.15 4.03 15 9 O -0.48 -16.85 10.62 -93.25 -0.99 -17.84 15 10 C -0.09 -3.52 4.89 -19.78 -0.10 -3.62 15 11 C 0.27 12.33 2.54 43.42 0.11 12.44 15 12 H 0.04 1.96 5.57 -2.39 -0.01 1.94 15 13 N -0.82 -35.50 8.44 -174.96 -1.48 -36.98 15 14 C -0.53 -28.29 8.38 25.60 0.21 -28.07 15 15 H 0.03 1.96 7.74 -2.91 -0.02 1.93 15 16 C 0.04 2.30 5.39 84.65 0.46 2.76 15 17 N -0.88 -49.59 12.77 21.45 0.27 -49.31 15 18 Si 0.94 43.88 29.54 68.60 2.03 45.90 15 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 22 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.08 2.26 7.46 -2.39 -0.02 2.24 15 24 H 0.07 2.52 6.25 -2.39 -0.01 2.51 15 25 H 0.17 3.68 8.06 -2.91 -0.02 3.65 15 26 H 0.39 10.63 7.75 -74.06 -0.57 10.05 15 27 H 0.31 11.64 9.06 -89.69 -0.81 10.83 15 28 H 0.33 13.28 5.35 -89.69 -0.48 12.80 15 29 H 0.25 13.95 8.31 -92.71 -0.77 13.17 15 Total: -1.00 -60.52 267.38 1.76 -58.76 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.63 Total: 24.90 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 1.89 Total: -21.18 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -1.20 Total: -86.29 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.99 Total: -17.84 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.74 Total: -3.03 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.22 kcal Total: -60.52 1.76 -58.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260386156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.675 kcal (2) G-P(sol) polarization free energy of solvation -60.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds