Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47254 * 270.00253 * 3 2 1 5 5 H 1.48504 * 109.47023 * 30.00093 * 3 2 1 6 6 H 1.48506 * 109.47394 * 149.99933 * 3 2 1 7 7 C 1.37882 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38200 * 120.01176 * 264.99707 * 13 10 9 15 15 C 1.38424 * 120.05110 * 180.02562 * 14 13 10 16 16 F 1.35101 * 119.96632 * 180.02562 * 15 14 13 17 17 C 1.38483 * 120.06860 * 0.02562 * 15 14 13 18 18 C 1.38217 * 120.01661 * 359.97438 * 17 15 14 19 19 Cl 1.73602 * 120.02418 * 179.97438 * 18 17 15 20 20 C 1.38645 * 120.00662 * 84.73280 * 13 10 9 21 21 O 1.35970 * 120.03468 * 359.97438 * 20 13 10 22 22 H 0.97003 * 119.99947 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 24 24 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 25 25 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 26 26 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 27 27 H 1.07992 * 119.97422 * 0.03459 * 14 13 10 28 28 H 1.08005 * 119.98936 * 179.97438 * 17 15 14 29 29 H 0.96702 * 113.99945 * 90.00502 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 1 3.5872 -3.1761 0.8393 12 7 3.6325 -3.2924 -1.2579 13 6 5.5235 -2.6383 0.1209 14 6 6.3100 -2.7081 -1.0133 15 6 7.6897 -2.7104 -0.9010 16 9 8.4569 -2.7781 -2.0110 17 6 8.2843 -2.6433 0.3478 18 6 7.5004 -2.5735 1.4840 19 17 8.2457 -2.4901 3.0497 20 6 6.1167 -2.5645 1.3719 21 8 5.3439 -2.4899 2.4882 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8745 -0.6799 -0.8911 25 1 4.0230 -2.8105 -2.0537 26 1 3.9015 -4.2649 -1.2562 27 1 5.8479 -2.7607 -1.9879 28 1 9.3609 -2.6456 0.4340 29 1 5.1145 -3.3501 2.8659 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260392483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = -69.995533 kcal Electronic energy + Delta-G solvation = -17024.204394 eV Core-core repulsion = 13887.818240 eV Total energy + Delta-G solvation = -3136.386154 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.06316 -40.12251 -36.85501 -36.65394 -35.40103 -32.44670 -30.26253 -29.51289 -28.80414 -24.94325 -22.72392 -22.25181 -19.99711 -18.60592 -17.55801 -17.11331 -16.55056 -15.90666 -15.48079 -15.40603 -14.74188 -14.34512 -14.04050 -13.84372 -13.66545 -12.90846 -12.71854 -12.31477 -11.98673 -11.69270 -11.44586 -11.27822 -10.99464 -10.70252 -10.35170 -10.17629 -9.77079 -9.15128 -8.88774 -8.53246 -8.45962 -8.21154 -5.94966 -3.90358 0.78177 0.89926 1.86580 3.18346 3.34962 3.42942 3.47124 4.00327 4.08202 4.51862 4.53030 4.74083 5.01294 5.06914 5.29230 5.40638 5.58171 5.69855 5.82075 5.92574 6.13446 6.42425 6.55676 7.09084 7.23772 7.59007 7.68744 7.85334 7.93263 8.64610 9.16031 9.67147 11.18595 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006588 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.912769 B = 4248.964945 C = 4755.207472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.870 3.130 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.494 4.494 8 H 0.081 0.919 9 C 0.003 3.997 10 C 0.150 3.850 11 H 0.094 0.906 12 N -0.818 5.818 13 C -0.088 4.088 14 C -0.143 4.143 15 C 0.105 3.895 16 F -0.135 7.135 17 C -0.149 4.149 18 C -0.035 4.035 19 Cl -0.051 7.051 20 C 0.115 3.885 21 O -0.470 6.470 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.009 0.991 25 H 0.335 0.665 26 H 0.327 0.673 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.258 -7.963 1.787 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.698 3.302 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.533 4.533 8 H 0.099 0.901 9 C -0.035 4.035 10 C 0.038 3.962 11 H 0.112 0.888 12 N -0.346 5.346 13 C -0.091 4.091 14 C -0.162 4.162 15 C 0.086 3.914 16 F -0.113 7.113 17 C -0.168 4.168 18 C -0.063 4.063 19 Cl -0.022 7.022 20 C 0.068 3.932 21 O -0.280 6.280 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.028 0.972 25 H 0.150 0.850 26 H 0.139 0.861 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 16.454 -7.051 2.003 18.013 hybrid contribution 1.752 0.397 -0.152 1.803 sum 18.207 -6.654 1.851 19.473 Atomic orbital electron populations 1.69898 1.06125 1.26538 1.51903 1.24964 0.94666 0.98705 0.95176 0.86930 0.80508 0.84406 0.78338 1.20516 1.21428 1.19163 1.20960 0.88450 0.94619 1.49225 0.90110 1.19622 0.98145 0.89068 0.96649 1.20558 0.82942 0.99647 0.93083 0.88813 1.58757 1.67153 1.05049 1.03623 1.21743 1.00934 0.95488 0.90960 1.21014 0.91351 1.03509 1.00366 1.17357 0.88601 1.03253 0.82202 1.91514 1.75263 1.93777 1.50759 1.20754 1.01002 1.05426 0.89632 1.21113 0.92203 1.05638 0.87339 1.98374 1.81937 1.96563 1.25349 1.18018 0.86890 1.00974 0.87288 1.84973 1.69519 1.33797 1.39723 0.92924 0.95454 0.97249 0.85041 0.86132 0.83902 0.83682 0.75278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 15 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 15 3 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 15 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 6 H -0.27 -6.59 6.54 56.52 0.37 -6.22 15 7 C -0.49 -13.81 9.39 -34.44 -0.32 -14.13 15 8 H 0.08 2.45 7.99 -52.48 -0.42 2.03 15 9 C 0.00 0.06 3.67 -27.89 -0.10 -0.04 15 10 C 0.15 2.70 2.64 -68.86 -0.18 2.51 15 11 H 0.09 1.71 7.70 -51.93 -0.40 1.31 15 12 N -0.82 -13.52 8.54 -5.65 -0.05 -13.57 15 13 C -0.09 -1.33 5.06 -104.49 -0.53 -1.86 15 14 C -0.14 -1.95 9.24 -39.53 -0.37 -2.31 15 15 C 0.11 1.36 7.30 -39.42 -0.29 1.07 15 16 F -0.13 -1.72 17.27 2.25 0.04 -1.68 15 17 C -0.15 -1.80 9.80 -39.50 -0.39 -2.19 15 18 C -0.04 -0.46 6.33 -39.37 -0.25 -0.71 15 19 Cl -0.05 -0.61 28.50 -51.86 -1.48 -2.09 15 20 C 0.12 1.68 6.67 -39.21 -0.26 1.41 15 21 O -0.47 -6.73 12.10 -19.65 -0.24 -6.97 15 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 23 H 0.03 0.67 7.20 -51.93 -0.37 0.29 15 24 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 15 25 H 0.34 5.18 7.21 -39.29 -0.28 4.89 15 26 H 0.33 4.36 9.06 -39.29 -0.36 4.01 15 27 H 0.14 1.76 6.29 -52.49 -0.33 1.43 15 28 H 0.15 1.45 8.06 -52.48 -0.42 1.02 15 29 H 0.39 3.71 9.06 45.56 0.41 4.12 15 LS Contribution 272.62 15.07 4.11 4.11 Total: -1.00 -31.95 272.62 -6.03 -37.98 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -1.73 Total: 6.59 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.79 Total: -14.44 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.73 Total: -40.83 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.24 Total: -6.97 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.95 -6.03 -37.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.019 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds