Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47254 * 270.00253 * 3 2 1 5 5 H 1.48504 * 109.47023 * 30.00093 * 3 2 1 6 6 H 1.48506 * 109.47394 * 149.99933 * 3 2 1 7 7 C 1.37882 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38200 * 120.01176 * 264.99707 * 13 10 9 15 15 C 1.38424 * 120.05110 * 180.02562 * 14 13 10 16 16 F 1.35101 * 119.96632 * 180.02562 * 15 14 13 17 17 C 1.38483 * 120.06860 * 0.02562 * 15 14 13 18 18 C 1.38217 * 120.01661 * 359.97438 * 17 15 14 19 19 Cl 1.73602 * 120.02418 * 179.97438 * 18 17 15 20 20 C 1.38645 * 120.00662 * 84.73280 * 13 10 9 21 21 O 1.35970 * 120.03468 * 359.97438 * 20 13 10 22 22 H 0.97003 * 119.99947 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 24 24 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 25 25 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 26 26 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 27 27 H 1.07992 * 119.97422 * 0.03459 * 14 13 10 28 28 H 1.08005 * 119.98936 * 179.97438 * 17 15 14 29 29 H 0.96702 * 113.99945 * 90.00502 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 1 3.5872 -3.1761 0.8393 12 7 3.6325 -3.2924 -1.2579 13 6 5.5235 -2.6383 0.1209 14 6 6.3100 -2.7081 -1.0133 15 6 7.6897 -2.7104 -0.9010 16 9 8.4569 -2.7781 -2.0110 17 6 8.2843 -2.6433 0.3478 18 6 7.5004 -2.5735 1.4840 19 17 8.2457 -2.4901 3.0497 20 6 6.1167 -2.5645 1.3719 21 8 5.3439 -2.4899 2.4882 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8745 -0.6799 -0.8911 25 1 4.0230 -2.8105 -2.0537 26 1 3.9015 -4.2649 -1.2562 27 1 5.8479 -2.7607 -1.9879 28 1 9.3609 -2.6456 0.4340 29 1 5.1145 -3.3501 2.8659 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = -93.812539 kcal Electronic energy + Delta-G solvation = -17025.237177 eV Core-core repulsion = 13887.818240 eV Total energy + Delta-G solvation = -3137.418937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.05003 -41.22037 -37.94038 -37.70989 -36.71585 -34.52999 -31.45506 -30.89774 -30.28214 -26.46904 -23.97115 -23.62967 -21.49018 -19.69730 -18.99579 -18.28359 -18.18734 -17.00048 -16.78239 -16.49313 -16.16969 -15.75246 -15.36738 -15.17670 -14.85157 -14.54588 -14.06100 -13.73715 -13.48320 -13.08533 -12.90529 -12.60345 -12.23205 -12.11287 -11.89814 -11.79355 -11.60713 -11.28720 -10.69659 -9.99959 -9.59309 -9.50209 -8.19203 -6.18368 -0.24081 -0.15026 0.88610 1.35112 1.38086 1.48250 2.14433 2.40154 3.00396 3.05248 3.15296 3.44577 3.73802 3.83619 3.99989 4.21458 4.42653 4.60666 4.63903 4.72707 4.87087 5.03509 5.22103 5.44861 5.53150 5.71391 6.32912 6.47281 6.69542 6.76845 6.90301 7.42638 8.97774 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006588 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.912769 B = 4248.964945 C = 4755.207472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.043 0.957 9 C 0.007 3.993 10 C 0.163 3.837 11 H 0.084 0.916 12 N -0.832 5.832 13 C -0.103 4.103 14 C -0.138 4.138 15 C 0.103 3.897 16 F -0.132 7.132 17 C -0.133 4.133 18 C -0.041 4.041 19 Cl -0.040 7.040 20 C 0.112 3.888 21 O -0.488 6.488 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.011 0.989 25 H 0.342 0.658 26 H 0.346 0.654 27 H 0.154 0.846 28 H 0.170 0.830 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.840 -7.793 1.648 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.062 0.938 9 C -0.031 4.031 10 C 0.050 3.950 11 H 0.102 0.898 12 N -0.363 5.363 13 C -0.107 4.107 14 C -0.157 4.157 15 C 0.084 3.916 16 F -0.111 7.111 17 C -0.153 4.153 18 C -0.069 4.069 19 Cl -0.011 7.011 20 C 0.065 3.935 21 O -0.301 6.301 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.030 0.970 25 H 0.157 0.843 26 H 0.160 0.840 27 H 0.171 0.829 28 H 0.188 0.812 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 19.059 -6.916 1.866 20.361 hybrid contribution 0.966 0.234 -0.078 0.997 sum 20.025 -6.682 1.788 21.186 Atomic orbital electron populations 1.70054 1.07976 1.27519 1.54010 1.25836 0.95436 1.02687 0.95276 0.85865 0.79387 0.79744 0.78841 1.19450 1.21283 1.17997 1.21227 0.91056 0.93034 1.47617 0.93837 1.19481 0.94823 0.92785 0.96003 1.20046 0.85053 0.96397 0.93480 0.89768 1.58646 1.67878 1.06424 1.03345 1.21308 0.99042 0.98312 0.91988 1.21090 0.91761 1.02558 1.00290 1.17328 0.88311 1.03428 0.82563 1.91526 1.75079 1.93769 1.50695 1.21019 1.02205 1.03177 0.88869 1.21103 0.91756 1.05769 0.88232 1.98380 1.81563 1.96509 1.24634 1.18125 0.87596 1.00700 0.87040 1.84910 1.69739 1.35630 1.39828 0.92910 0.96389 0.97050 0.84294 0.83973 0.82889 0.81230 0.73173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 13.96 21.45 0.30 -60.17 15 2 C 0.00 0.19 5.47 84.66 0.46 0.65 15 3 Si 0.94 45.43 27.47 68.60 1.88 47.32 15 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 15 6 H -0.26 -11.85 6.54 99.48 0.65 -11.20 15 7 C -0.49 -27.89 9.39 25.60 0.24 -27.65 15 8 H 0.04 2.74 7.99 -2.91 -0.02 2.71 15 9 C 0.01 0.31 3.67 29.85 0.11 0.42 15 10 C 0.16 5.76 2.64 44.17 0.12 5.87 15 11 H 0.08 3.09 7.70 -2.39 -0.02 3.07 15 12 N -0.83 -26.90 8.54 -171.80 -1.47 -28.37 15 13 C -0.10 -2.96 5.06 -19.78 -0.10 -3.06 15 14 C -0.14 -3.43 9.24 22.31 0.21 -3.22 15 15 C 0.10 2.36 7.30 22.37 0.16 2.52 15 16 F -0.13 -2.98 17.27 44.97 0.78 -2.20 15 17 C -0.13 -2.80 9.80 22.32 0.22 -2.58 15 18 C -0.04 -0.97 6.33 22.41 0.14 -0.82 15 19 Cl -0.04 -0.85 28.50 -2.72 -0.08 -0.93 15 20 C 0.11 3.06 6.67 22.51 0.15 3.21 15 21 O -0.49 -13.39 12.10 -93.22 -1.13 -14.52 15 22 H 0.26 15.63 8.31 -92.71 -0.77 14.86 15 23 H 0.02 0.86 7.20 -2.39 -0.02 0.84 15 24 H 0.01 0.51 7.57 -2.39 -0.02 0.49 15 25 H 0.34 10.14 7.21 -89.69 -0.65 9.49 15 26 H 0.35 8.84 9.06 -89.70 -0.81 8.03 15 27 H 0.15 3.41 6.29 -2.91 -0.02 3.39 15 28 H 0.17 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.41 7.34 9.06 -74.06 -0.67 6.67 15 Total: -1.00 -68.44 272.62 1.04 -67.40 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.96 Total: 16.14 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 1.71 Total: -24.66 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.17 Total: -88.54 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.13 Total: -14.52 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -68.44 1.04 -67.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.417 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds