Wall clock time and date at job start Mon Mar 30 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99592 * 2 1 4 4 H 1.48504 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47371 * 300.00128 * 3 2 1 6 6 H 1.48496 * 109.47443 * 60.00520 * 3 2 1 7 7 C 1.37873 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00384 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99873 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 299.99916 * 9 7 2 11 11 C 1.53000 * 109.46912 * 60.00145 * 9 7 2 12 12 N 1.46901 * 109.46818 * 185.00369 * 11 9 7 13 13 C 1.50699 * 109.47227 * 180.02562 * 9 7 2 14 14 C 1.38197 * 119.99657 * 300.00067 * 13 9 7 15 15 C 1.38288 * 120.06534 * 179.97438 * 14 13 9 16 16 Cl 1.73600 * 119.96966 * 180.02562 * 15 14 13 17 17 C 1.38618 * 120.06296 * 0.02562 * 15 14 13 18 18 F 1.35101 * 120.00086 * 180.02562 * 17 15 14 19 19 C 1.38329 * 119.99475 * 0.02562 * 17 15 14 20 20 C 1.38711 * 119.99810 * 119.72561 * 13 9 7 21 21 O 1.35912 * 120.03006 * 359.97438 * 20 13 9 22 22 H 0.97001 * 120.00323 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47069 * 304.99691 * 11 9 7 24 24 H 1.08991 * 109.47625 * 65.00010 * 11 9 7 25 25 H 1.00900 * 111.00172 * 180.02562 * 12 11 9 26 26 H 1.00901 * 111.00083 * 303.94749 * 12 11 9 27 27 H 1.07995 * 119.96576 * 359.97438 * 14 13 9 28 28 H 1.07998 * 120.03243 * 180.02562 * 19 17 15 29 29 H 0.96706 * 114.00091 * 90.00134 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3710 -2.5799 -1.2495 12 7 -0.4522 -3.7951 -1.1905 13 6 2.2304 -3.6445 -0.0005 14 6 3.1343 -3.7808 -1.0370 15 6 4.0339 -4.8310 -1.0382 16 17 5.1687 -4.9994 -2.3412 17 6 4.0305 -5.7494 0.0000 18 9 4.9103 -6.7747 -0.0021 19 6 3.1262 -5.6161 1.0383 20 6 2.2284 -4.5587 1.0427 21 8 1.3438 -4.4217 2.0654 22 1 -0.4851 0.8400 0.0004 23 1 -0.2765 -1.7043 -1.2949 24 1 1.0023 -2.6114 -2.1374 25 1 -1.0427 -3.8718 -2.0052 26 1 0.1232 -4.6169 -1.0830 27 1 3.1380 -3.0663 -1.8469 28 1 3.1233 -6.3311 1.8477 29 1 0.5044 -4.8805 1.9235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260397938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:44 Heat of formation + Delta-G solvation = -77.960430 kcal Electronic energy + Delta-G solvation = -17294.567039 eV Core-core repulsion = 14157.835501 eV Total energy + Delta-G solvation = -3136.731538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.71476 -39.59451 -36.77992 -35.89614 -35.01038 -32.29820 -30.82802 -29.50360 -27.21928 -24.02936 -23.04556 -22.16165 -19.78508 -18.35737 -16.93180 -16.64731 -16.09956 -15.58461 -15.38811 -14.94301 -14.41323 -14.17927 -13.83012 -13.54235 -13.30071 -12.62755 -12.56589 -12.00228 -11.80105 -11.15693 -11.05169 -10.89145 -10.74228 -10.61005 -10.48514 -10.29014 -9.59592 -9.34167 -8.56742 -8.54271 -7.96177 -7.77004 -6.12719 -4.20977 1.24783 1.43065 2.25857 3.23730 3.32693 3.36743 3.70879 4.19711 4.35202 4.67086 5.02555 5.15143 5.38538 5.52657 5.58230 5.89049 6.05873 6.26355 6.46019 6.54737 6.67762 6.81771 7.02814 7.48629 7.70064 7.78995 8.01676 8.06533 8.19896 8.26538 8.82572 9.44461 10.92189 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.007380 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.851136 B = 3793.178500 C = 4281.174471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.083 3.917 10 H 0.061 0.939 11 C 0.065 3.935 12 N -0.852 5.852 13 C -0.055 4.055 14 C -0.067 4.067 15 C -0.081 4.081 16 Cl -0.068 7.068 17 C 0.094 3.906 18 F -0.136 7.136 19 C -0.175 4.175 20 C 0.135 3.865 21 O -0.482 6.482 22 H 0.263 0.737 23 H 0.111 0.889 24 H 0.000 1.000 25 H 0.324 0.676 26 H 0.316 0.684 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -9.927 -2.165 10.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.065 3.935 10 H 0.079 0.921 11 C -0.065 4.065 12 N -0.379 5.379 13 C -0.056 4.056 14 C -0.086 4.086 15 C -0.109 4.109 16 Cl -0.039 7.039 17 C 0.074 3.926 18 F -0.114 7.114 19 C -0.195 4.195 20 C 0.090 3.910 21 O -0.292 6.292 22 H 0.073 0.927 23 H 0.129 0.871 24 H 0.018 0.982 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.164 0.836 28 H 0.159 0.841 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.454 -9.173 -1.360 9.895 hybrid contribution 0.956 0.147 -1.158 1.509 sum 4.410 -9.026 -2.518 10.356 Atomic orbital electron populations 1.69872 1.05780 1.26707 1.49629 1.24953 0.94916 0.99154 0.94655 0.86498 0.80211 0.83453 0.77707 1.19668 1.20922 1.20832 1.21065 0.92958 0.89404 1.51826 0.92222 1.17914 0.90637 0.88630 0.96350 0.92097 1.22190 0.95777 0.92473 0.96070 1.59013 1.27060 1.05482 1.46345 1.21124 0.97079 0.96787 0.90593 1.20868 0.92542 0.95123 1.00024 1.20996 0.98217 0.99538 0.92123 1.98344 1.60022 1.97551 1.47960 1.16970 0.92273 0.87447 0.95912 1.91483 1.66797 1.56644 1.96523 1.21228 0.98490 1.00755 0.99023 1.18103 0.92253 0.92591 0.88081 1.84830 1.28403 1.76395 1.39549 0.92736 0.87106 0.98206 0.86573 0.87319 0.83641 0.84108 0.75202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.76 11.29 55.43 0.63 -23.13 15 2 C 0.07 1.72 5.29 -17.82 -0.09 1.62 15 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 7 C -0.51 -13.22 8.24 -34.44 -0.28 -13.51 15 8 H 0.06 1.55 7.60 -52.48 -0.40 1.15 15 9 C 0.08 1.90 2.12 -92.92 -0.20 1.71 15 10 H 0.06 1.56 6.99 -51.93 -0.36 1.19 15 11 C 0.06 1.39 5.98 -3.82 -0.02 1.37 15 12 N -0.85 -15.13 9.62 -10.37 -0.10 -15.23 15 13 C -0.05 -1.07 3.78 -104.46 -0.40 -1.46 15 14 C -0.07 -1.22 8.43 -39.58 -0.33 -1.55 15 15 C -0.08 -1.37 6.33 -39.42 -0.25 -1.62 15 16 Cl -0.07 -1.03 28.61 -51.86 -1.48 -2.52 15 17 C 0.09 1.53 7.27 -39.41 -0.29 1.24 15 18 F -0.14 -2.15 16.83 2.25 0.04 -2.11 15 19 C -0.18 -2.74 9.96 -39.37 -0.39 -3.13 15 20 C 0.14 2.37 6.68 -39.23 -0.26 2.10 15 21 O -0.48 -8.12 12.26 -19.46 -0.24 -8.36 15 22 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 23 H 0.11 2.75 5.95 -51.93 -0.31 2.44 15 24 H 0.00 -0.01 7.23 -51.93 -0.38 -0.38 15 25 H 0.32 5.08 9.08 -39.29 -0.36 4.72 15 26 H 0.32 5.13 8.07 -39.29 -0.32 4.81 15 27 H 0.15 2.70 7.54 -52.49 -0.40 2.30 15 28 H 0.14 1.86 8.06 -52.49 -0.42 1.44 15 29 H 0.39 4.87 9.06 45.56 0.41 5.28 15 LS Contribution 271.45 15.07 4.09 4.09 Total: -1.00 -27.30 271.45 -6.27 -33.57 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -1.66 Total: 11.45 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.52 Total: -13.23 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.53 Total: -38.36 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.24 Total: -8.36 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.48 Total: -2.52 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.30 -6.27 -33.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260397938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.391 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds