Wall clock time and date at job start Mon Mar 30 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99592 * 2 1 4 4 H 1.48504 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47371 * 300.00128 * 3 2 1 6 6 H 1.48496 * 109.47443 * 60.00520 * 3 2 1 7 7 C 1.37873 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00384 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99873 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 299.99916 * 9 7 2 11 11 C 1.53000 * 109.46912 * 60.00145 * 9 7 2 12 12 N 1.46901 * 109.46818 * 185.00369 * 11 9 7 13 13 C 1.50699 * 109.47227 * 180.02562 * 9 7 2 14 14 C 1.38197 * 119.99657 * 300.00067 * 13 9 7 15 15 C 1.38288 * 120.06534 * 179.97438 * 14 13 9 16 16 Cl 1.73600 * 119.96966 * 180.02562 * 15 14 13 17 17 C 1.38618 * 120.06296 * 0.02562 * 15 14 13 18 18 F 1.35101 * 120.00086 * 180.02562 * 17 15 14 19 19 C 1.38329 * 119.99475 * 0.02562 * 17 15 14 20 20 C 1.38711 * 119.99810 * 119.72561 * 13 9 7 21 21 O 1.35912 * 120.03006 * 359.97438 * 20 13 9 22 22 H 0.97001 * 120.00323 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47069 * 304.99691 * 11 9 7 24 24 H 1.08991 * 109.47625 * 65.00010 * 11 9 7 25 25 H 1.00900 * 111.00172 * 180.02562 * 12 11 9 26 26 H 1.00901 * 111.00083 * 303.94749 * 12 11 9 27 27 H 1.07995 * 119.96576 * 359.97438 * 14 13 9 28 28 H 1.07998 * 120.03243 * 180.02562 * 19 17 15 29 29 H 0.96706 * 114.00091 * 90.00134 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3710 -2.5799 -1.2495 12 7 -0.4522 -3.7951 -1.1905 13 6 2.2304 -3.6445 -0.0005 14 6 3.1343 -3.7808 -1.0370 15 6 4.0339 -4.8310 -1.0382 16 17 5.1687 -4.9994 -2.3412 17 6 4.0305 -5.7494 0.0000 18 9 4.9103 -6.7747 -0.0021 19 6 3.1262 -5.6161 1.0383 20 6 2.2284 -4.5587 1.0427 21 8 1.3438 -4.4217 2.0654 22 1 -0.4851 0.8400 0.0004 23 1 -0.2765 -1.7043 -1.2949 24 1 1.0023 -2.6114 -2.1374 25 1 -1.0427 -3.8718 -2.0052 26 1 0.1232 -4.6169 -1.0830 27 1 3.1380 -3.0663 -1.8469 28 1 3.1233 -6.3311 1.8477 29 1 0.5044 -4.8805 1.9235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260397938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:44 Heat of formation + Delta-G solvation = -96.962131 kcal Electronic energy + Delta-G solvation = -17295.391014 eV Core-core repulsion = 14157.835501 eV Total energy + Delta-G solvation = -3137.555514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.99600 -40.98600 -38.07308 -37.33914 -36.54579 -34.14690 -32.32482 -30.88883 -28.87130 -25.87703 -24.46094 -23.57324 -21.41929 -19.68454 -18.63570 -18.01348 -17.59564 -17.05399 -16.83459 -16.47980 -16.09492 -15.59615 -15.28746 -14.91074 -14.74064 -14.19904 -14.02131 -13.70823 -13.17826 -12.93581 -12.74757 -12.45085 -12.28702 -12.11859 -12.03227 -11.94517 -11.24529 -11.13208 -10.51811 -9.89346 -9.41763 -9.27723 -8.10279 -6.24277 -0.09499 0.08019 0.96268 1.40767 1.44787 1.54294 2.31767 2.47228 2.88800 3.16621 3.37709 3.74101 3.96148 4.08237 4.20173 4.56871 4.68652 4.73489 4.97848 5.00463 5.08042 5.29213 5.57087 5.64175 5.90285 5.97144 6.27095 6.54359 6.76462 6.85525 6.90995 7.43743 8.93092 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.007380 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.851136 B = 3793.178500 C = 4281.174471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.050 0.950 9 C 0.090 3.910 10 H 0.030 0.970 11 C 0.078 3.922 12 N -0.847 5.847 13 C -0.076 4.076 14 C -0.069 4.069 15 C -0.084 4.084 16 Cl -0.054 7.054 17 C 0.101 3.899 18 F -0.130 7.130 19 C -0.160 4.160 20 C 0.137 3.863 21 O -0.494 6.494 22 H 0.262 0.738 23 H 0.077 0.923 24 H -0.001 1.001 25 H 0.338 0.662 26 H 0.330 0.670 27 H 0.136 0.864 28 H 0.171 0.829 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 -11.175 -2.073 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.071 3.929 10 H 0.048 0.952 11 C -0.053 4.053 12 N -0.375 5.375 13 C -0.077 4.077 14 C -0.088 4.088 15 C -0.111 4.111 16 Cl -0.025 7.025 17 C 0.081 3.919 18 F -0.108 7.108 19 C -0.180 4.180 20 C 0.091 3.909 21 O -0.307 6.307 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.017 0.983 25 H 0.150 0.850 26 H 0.141 0.859 27 H 0.154 0.846 28 H 0.189 0.811 29 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.301 -10.444 -1.278 11.368 hybrid contribution 0.707 0.447 -1.181 1.447 sum 5.008 -9.997 -2.459 11.449 Atomic orbital electron populations 1.69992 1.06801 1.27190 1.50508 1.25601 0.95601 1.01884 0.94641 0.85660 0.79067 0.80234 0.77656 1.19566 1.20377 1.20839 1.21371 0.92778 0.91155 1.51346 0.93148 1.17608 0.90918 0.89008 0.95317 0.95238 1.21794 0.95177 0.92733 0.95555 1.58827 1.26758 1.04723 1.47239 1.20836 0.97563 0.96918 0.92400 1.20693 0.92976 0.95587 0.99558 1.20964 0.98150 0.99209 0.92806 1.98349 1.59340 1.97459 1.47352 1.17016 0.92100 0.87153 0.95679 1.91506 1.66568 1.56286 1.96464 1.21380 0.96976 1.00274 0.99327 1.18106 0.92739 0.92600 0.87412 1.84780 1.29474 1.77067 1.39338 0.92834 0.90506 0.98276 0.84984 0.85864 0.84597 0.81134 0.73090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.80 11.29 21.44 0.24 -49.55 15 2 C 0.02 1.20 5.29 84.65 0.45 1.65 15 3 Si 0.95 42.38 29.54 68.60 2.03 44.40 15 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 7 C -0.53 -27.60 8.24 25.60 0.21 -27.39 15 8 H 0.05 2.66 7.60 -2.91 -0.02 2.64 15 9 C 0.09 4.18 2.12 -12.29 -0.03 4.15 15 10 H 0.03 1.54 6.99 -2.39 -0.02 1.52 15 11 C 0.08 3.40 5.98 86.30 0.52 3.91 15 12 N -0.85 -29.50 9.62 -186.72 -1.80 -31.30 15 13 C -0.08 -2.92 3.78 -19.76 -0.07 -3.00 15 14 C -0.07 -2.48 8.43 22.27 0.19 -2.29 15 15 C -0.08 -2.66 6.33 22.37 0.14 -2.52 15 16 Cl -0.05 -1.55 28.61 -2.72 -0.08 -1.63 15 17 C 0.10 3.00 7.27 22.38 0.16 3.16 15 18 F -0.13 -3.69 16.83 44.97 0.76 -2.93 15 19 C -0.16 -4.53 9.96 22.41 0.22 -4.30 15 20 C 0.14 4.57 6.68 22.50 0.15 4.72 15 21 O -0.49 -15.97 12.26 -92.56 -1.14 -17.10 15 22 H 0.26 13.78 8.31 -92.71 -0.77 13.01 15 23 H 0.08 3.91 5.95 -2.39 -0.01 3.90 15 24 H 0.00 -0.04 7.23 -2.39 -0.02 -0.06 15 25 H 0.34 10.25 9.08 -89.69 -0.81 9.44 15 26 H 0.33 10.25 8.07 -89.69 -0.72 9.53 15 27 H 0.14 5.06 7.54 -2.91 -0.02 5.03 15 28 H 0.17 3.79 8.06 -2.91 -0.02 3.77 15 29 H 0.41 9.56 9.06 -74.05 -0.67 8.89 15 Total: -1.00 -57.85 271.45 0.98 -56.87 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.97 Total: 23.16 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 1.94 Total: -21.91 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.55 Total: -80.85 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.14 Total: -17.10 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.76 Total: -2.93 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -57.85 0.98 -56.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260397938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.096 kcal (2) G-P(sol) polarization free energy of solvation -57.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds