Wall clock time and date at job start Mon Mar 30 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35918 * 117.00204 * 2 1 4 4 C 1.38677 * 120.04481 * 0.02562 * 3 2 1 5 5 C 1.38361 * 119.93352 * 179.97438 * 4 3 2 6 6 F 1.35100 * 119.99165 * 180.02562 * 5 4 3 7 7 C 1.38510 * 120.02616 * 359.72468 * 5 4 3 8 8 C 1.38217 * 120.08742 * 0.55227 * 7 5 4 9 9 C 1.50700 * 119.96561 * 179.72917 * 8 7 5 10 10 H 1.09006 * 109.47033 * 219.72507 * 9 8 7 11 11 N 1.46904 * 109.46886 * 339.71794 * 9 8 7 12 12 C 1.50700 * 109.47566 * 99.72112 * 9 8 7 13 13 H 1.07997 * 119.99627 * 354.47151 * 12 9 8 14 14 C 1.37869 * 119.99853 * 174.47200 * 12 9 8 15 15 N 1.31517 * 119.99935 * 163.82194 * 14 12 9 16 16 Si 1.86796 * 120.00506 * 343.82625 * 14 12 9 17 17 H 1.48504 * 109.47192 * 270.00364 * 16 14 12 18 18 H 1.48501 * 109.47149 * 29.99944 * 16 14 12 19 19 H 1.48501 * 109.47770 * 149.99898 * 16 14 12 20 20 C 1.38261 * 120.07075 * 359.44884 * 8 7 5 21 21 Cl 1.73601 * 120.01330 * 180.25720 * 20 8 7 22 22 H 1.09008 * 109.46602 * 300.00144 * 1 2 3 23 23 H 1.08997 * 109.47195 * 60.00181 * 1 2 3 24 24 H 1.09004 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.03573 * 359.95507 * 4 3 2 26 26 H 1.07993 * 119.95276 * 180.27040 * 7 5 4 27 27 H 1.00904 * 110.99471 * 66.11254 * 11 9 8 28 28 H 1.00901 * 110.99943 * 190.06139 * 11 9 8 29 29 H 0.97007 * 120.00063 * 354.92974 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2918 2.3747 0.0005 5 6 1.9224 3.6062 0.0011 6 9 1.1887 4.7406 0.0021 7 6 3.3057 3.6766 0.0068 8 6 4.0585 2.5175 0.0005 9 6 5.5634 2.5973 0.0007 10 1 5.9680 1.8307 -0.6603 11 7 5.9834 3.9231 -0.4725 12 6 6.0781 2.3769 1.3998 13 1 5.3842 2.2861 2.2223 14 6 7.4348 2.2913 1.6296 15 7 7.9041 2.4188 2.8516 16 14 8.6066 1.9941 0.2056 17 1 8.7976 0.5334 0.0182 18 1 8.0382 2.5819 -1.0341 19 1 9.9155 2.6307 0.5002 20 6 3.4324 1.2848 0.0000 21 17 4.3794 -0.1702 -0.0012 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2132 2.3197 0.0002 26 1 3.7966 4.6385 0.0117 27 1 5.7056 4.6435 0.1771 28 1 6.9784 3.9495 -0.6380 29 1 7.3050 2.6461 3.5800 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260415951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:23 Heat of formation + Delta-G solvation = -82.686530 kcal Electronic energy + Delta-G solvation = -17254.916647 eV Core-core repulsion = 14117.980169 eV Total energy + Delta-G solvation = -3136.936477 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.01783 -41.23445 -39.03814 -37.21336 -36.33778 -33.91229 -31.42611 -30.89301 -28.51931 -27.53362 -24.60939 -23.65625 -21.73824 -19.86528 -19.16462 -18.22648 -17.62506 -17.37912 -17.03971 -16.39759 -16.35031 -15.62730 -15.53411 -14.93130 -14.80817 -14.52314 -14.00019 -13.79823 -13.60157 -12.97028 -12.55793 -12.46642 -12.41649 -12.29032 -11.89570 -11.77378 -11.54108 -11.32964 -10.62441 -9.83049 -9.50567 -9.23230 -8.66244 -6.42751 -0.06259 0.18482 1.29471 1.45625 1.50151 1.67293 2.13209 2.40684 2.43931 3.02669 3.10976 3.58959 3.87819 3.94823 4.09914 4.33254 4.39013 4.43792 4.55134 4.70509 4.84034 4.92080 5.00773 5.40871 5.57705 5.69018 5.99269 6.19380 6.41399 6.51219 6.79093 7.34752 8.59848 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.008172 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.296617 B = 3425.385302 C = 4185.292702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.317 6.317 3 C 0.164 3.836 4 C -0.242 4.242 5 C 0.138 3.862 6 F -0.132 7.132 7 C -0.179 4.179 8 C 0.021 3.979 9 C 0.216 3.784 10 H 0.055 0.945 11 N -0.844 5.844 12 C -0.603 4.603 13 H 0.017 0.983 14 C -0.007 4.007 15 N -0.931 5.931 16 Si 1.072 2.928 17 H -0.278 1.278 18 H -0.234 1.234 19 H -0.283 1.283 20 C -0.101 4.101 21 Cl -0.059 7.059 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.125 0.875 25 H 0.178 0.822 26 H 0.148 0.852 27 H 0.333 0.667 28 H 0.334 0.666 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.084 -1.475 -8.306 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.116 3.884 4 C -0.262 4.262 5 C 0.118 3.882 6 F -0.111 7.111 7 C -0.198 4.198 8 C 0.019 3.981 9 C 0.106 3.894 10 H 0.073 0.927 11 N -0.375 5.375 12 C -0.642 4.642 13 H 0.036 0.964 14 C -0.207 4.207 15 N -0.566 5.566 16 Si 0.893 3.107 17 H -0.204 1.204 18 H -0.158 1.158 19 H -0.209 1.209 20 C -0.129 4.129 21 Cl -0.030 7.030 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.143 0.857 25 H 0.195 0.805 26 H 0.166 0.834 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.861 -2.161 -9.310 16.024 hybrid contribution -1.124 0.378 2.005 2.330 sum -13.986 -1.783 -7.305 15.879 Atomic orbital electron populations 1.23514 0.75575 1.06219 1.02816 1.86179 1.24159 1.24754 1.87899 1.18245 0.89422 0.85654 0.95057 1.21119 1.02178 0.89325 1.13556 1.17388 0.88697 0.82008 1.00078 1.91491 1.76958 1.48971 1.93672 1.20889 0.91595 0.99935 1.07409 1.19622 0.97269 0.90072 0.91093 1.18173 0.87175 0.89991 0.94058 0.92749 1.59676 1.20446 1.05660 1.51687 1.22406 0.93431 1.55269 0.93101 0.96428 1.26989 0.98967 0.92321 1.02399 1.70917 1.38568 1.45589 1.01510 0.83716 0.74581 0.78213 0.74173 1.20423 1.15825 1.20902 1.20180 0.89403 0.88765 1.14592 1.98323 1.72383 1.35234 1.97047 0.91382 0.90776 0.85669 0.80477 0.83423 0.85444 0.85147 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 15 2 O -0.32 -8.96 9.95 -92.63 -0.92 -9.88 15 3 C 0.16 5.34 6.68 22.51 0.15 5.49 15 4 C -0.24 -6.81 9.01 22.40 0.20 -6.61 15 5 C 0.14 4.37 7.30 22.36 0.16 4.54 15 6 F -0.13 -3.89 17.27 44.97 0.78 -3.12 15 7 C -0.18 -6.57 9.25 22.33 0.21 -6.36 15 8 C 0.02 0.88 5.03 -19.86 -0.10 0.78 15 9 C 0.22 9.79 1.87 43.42 0.08 9.87 15 10 H 0.05 2.52 5.95 -2.38 -0.01 2.51 15 11 N -0.84 -34.12 8.50 -174.94 -1.49 -35.60 15 12 C -0.60 -32.32 8.72 25.60 0.22 -32.09 15 13 H 0.02 1.06 7.99 -2.91 -0.02 1.04 15 14 C -0.01 -0.37 5.44 84.65 0.46 0.09 15 15 N -0.93 -56.21 13.70 21.44 0.29 -55.92 15 16 Si 1.07 47.48 26.56 68.60 1.82 49.30 15 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 18 H -0.23 -9.01 5.46 99.48 0.54 -8.46 15 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 20 C -0.10 -4.01 6.32 22.41 0.14 -3.87 15 21 Cl -0.06 -2.38 26.86 -2.72 -0.07 -2.45 15 22 H 0.07 0.96 7.66 -2.38 -0.02 0.95 15 23 H 0.07 0.96 7.66 -2.39 -0.02 0.94 15 24 H 0.13 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.18 3.54 6.30 -2.91 -0.02 3.52 15 26 H 0.15 5.21 6.40 -2.91 -0.02 5.19 15 27 H 0.33 13.10 7.58 -89.69 -0.68 12.42 15 28 H 0.33 13.20 5.76 -89.69 -0.52 12.69 15 29 H 0.25 15.73 8.73 -92.70 -0.81 14.93 15 Total: -1.00 -63.54 264.11 2.87 -60.67 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.18 Total: 23.84 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 2.64 Total: -26.85 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -1.19 Total: -91.52 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.92 Total: -9.88 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.82 Total: 49.30 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.07 Total: -2.45 kcal Total: -63.54 2.87 -60.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260415951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.014 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds