Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47505 * 240.00306 * 3 2 1 5 5 H 1.48504 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46881 * 119.99995 * 3 2 1 7 7 C 1.37873 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00104 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46721 * 300.00767 * 9 7 2 11 11 C 1.53001 * 109.46983 * 60.00462 * 9 7 2 12 12 N 1.46893 * 109.47262 * 185.00155 * 11 9 7 13 13 C 1.50694 * 109.47217 * 180.02562 * 9 7 2 14 14 C 1.38293 * 119.93677 * 299.72604 * 13 9 7 15 15 C 1.38313 * 120.05369 * 180.27431 * 14 13 9 16 16 F 1.35107 * 120.04023 * 180.02562 * 15 14 13 17 17 C 1.38898 * 119.91751 * 0.02562 * 15 14 13 18 18 O 1.35982 * 120.06740 * 180.02562 * 17 15 14 19 19 C 1.38718 * 119.87098 * 359.97438 * 17 15 14 20 20 Cl 1.73597 * 120.02995 * 179.97438 * 19 17 15 21 21 C 1.38225 * 119.93447 * 120.00149 * 13 9 7 22 22 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47111 * 305.00046 * 11 9 7 24 24 H 1.09003 * 109.47159 * 64.99822 * 11 9 7 25 25 H 1.00897 * 111.00418 * 180.02562 * 12 11 9 26 26 H 1.00905 * 110.99959 * 303.95257 * 12 11 9 27 27 H 1.08006 * 119.96846 * 0.27801 * 14 13 9 28 28 H 0.96700 * 114.00262 * 269.98077 * 18 17 15 29 29 H 1.08004 * 119.95471 * 359.69881 * 21 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5570 0.8896 11 6 0.3710 -2.5800 -1.2495 12 7 -0.4522 -3.7951 -1.1907 13 6 2.2303 -3.6446 -0.0005 14 6 3.1305 -3.7829 -1.0412 15 6 4.0266 -4.8365 -1.0465 16 9 4.9062 -4.9712 -2.0632 17 6 4.0210 -5.7559 -0.0054 18 8 4.9010 -6.7926 -0.0073 19 6 3.1167 -5.6140 1.0368 20 17 3.1057 -6.7611 2.3398 21 6 2.2233 -4.5580 1.0368 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2765 -1.7043 -1.2951 24 1 1.0025 -2.6115 -2.1375 25 1 -1.0426 -3.8718 -2.0053 26 1 0.1233 -4.6170 -1.0830 27 1 3.1337 -3.0676 -1.8505 28 1 4.5712 -7.5877 -0.4480 29 1 1.5194 -4.4471 1.8484 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = -79.191963 kcal Electronic energy + Delta-G solvation = -17139.849117 eV Core-core repulsion = 14003.064176 eV Total energy + Delta-G solvation = -3136.784941 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.65850 -39.47337 -37.21086 -36.34692 -34.64321 -32.31947 -30.35292 -30.12696 -27.19451 -24.04906 -22.94938 -22.28229 -19.91466 -18.48692 -16.94306 -16.76493 -16.15871 -15.80361 -14.99595 -14.94424 -14.63348 -14.28167 -13.81671 -13.65122 -13.23762 -12.71541 -12.19292 -12.13193 -11.95628 -11.21295 -11.13345 -11.08407 -10.71894 -10.60031 -10.47436 -10.32099 -9.73863 -9.41099 -8.59859 -8.44057 -8.10393 -7.75856 -6.16897 -4.26674 1.28434 1.34380 2.21756 3.24008 3.29305 3.32137 3.72714 4.08783 4.31308 4.57651 5.10828 5.23088 5.25863 5.59626 5.66027 5.73345 6.06409 6.23861 6.43148 6.59465 6.66643 6.84574 7.01003 7.44289 7.60382 7.65635 7.74630 8.03536 8.20062 8.25118 8.76912 9.39623 10.87703 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.006504 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.694522 B = 4303.964240 C = 4522.431895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.082 3.918 10 H 0.053 0.947 11 C 0.066 3.934 12 N -0.852 5.852 13 C 0.002 3.998 14 C -0.132 4.132 15 C 0.082 3.918 16 F -0.135 7.135 17 C 0.048 3.952 18 O -0.480 6.480 19 C -0.033 4.033 20 Cl -0.063 7.063 21 C -0.111 4.111 22 H 0.265 0.735 23 H 0.111 0.889 24 H 0.001 0.999 25 H 0.323 0.677 26 H 0.320 0.680 27 H 0.145 0.855 28 H 0.383 0.617 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 -10.690 -1.361 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.063 3.937 10 H 0.071 0.929 11 C -0.064 4.064 12 N -0.380 5.380 13 C 0.001 3.999 14 C -0.151 4.151 15 C 0.062 3.938 16 F -0.114 7.114 17 C 0.002 3.998 18 O -0.288 6.288 19 C -0.061 4.061 20 Cl -0.034 7.034 21 C -0.130 4.130 22 H 0.075 0.925 23 H 0.129 0.871 24 H 0.019 0.981 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.162 0.838 28 H 0.238 0.762 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.318 -9.936 -0.312 10.480 hybrid contribution 0.957 0.140 -1.201 1.541 sum 4.275 -9.796 -1.512 10.794 Atomic orbital electron populations 1.69858 1.05810 1.27073 1.49106 1.24962 0.94920 0.99209 0.94498 0.86589 0.79593 0.82660 0.78859 1.20134 1.21133 1.20058 1.20994 0.92976 0.89339 1.52538 0.92147 1.18004 0.90484 0.88842 0.96336 0.92922 1.22153 0.95712 0.92645 0.95856 1.58969 1.27170 1.05543 1.46274 1.20602 0.94633 0.94600 0.90052 1.21214 0.95285 0.96924 1.01699 1.17913 0.91946 0.98044 0.85922 1.91470 1.66873 1.95677 1.57381 1.17864 0.94741 0.92765 0.94461 1.84918 1.40339 1.23107 1.80462 1.21083 0.98421 0.95070 0.91477 1.98344 1.98054 1.59416 1.47585 1.21138 0.98593 0.92863 1.00363 0.92514 0.87077 0.98119 0.86611 0.86971 0.83757 0.76167 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.41 11.29 55.43 0.63 -22.78 15 2 C 0.07 1.72 5.29 -17.82 -0.09 1.63 15 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.52 -13.08 8.24 -34.44 -0.28 -13.37 15 8 H 0.06 1.53 7.61 -52.49 -0.40 1.13 15 9 C 0.08 1.85 2.16 -92.92 -0.20 1.65 15 10 H 0.05 1.32 7.87 -51.93 -0.41 0.91 15 11 C 0.07 1.42 5.98 -3.83 -0.02 1.40 15 12 N -0.85 -15.58 9.62 -10.37 -0.10 -15.68 15 13 C 0.00 0.03 3.77 -104.61 -0.39 -0.36 15 14 C -0.13 -2.42 8.63 -39.53 -0.34 -2.76 15 15 C 0.08 1.40 7.31 -39.31 -0.29 1.11 15 16 F -0.14 -2.30 17.11 2.25 0.04 -2.26 15 17 C 0.05 0.77 6.70 -39.16 -0.26 0.51 15 18 O -0.48 -6.79 12.83 -19.68 -0.25 -7.04 15 19 C -0.03 -0.53 6.33 -39.38 -0.25 -0.78 15 20 Cl -0.06 -0.89 28.50 -51.86 -1.48 -2.37 15 21 C -0.11 -1.93 9.45 -39.56 -0.37 -2.30 15 22 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 23 H 0.11 2.74 5.95 -51.93 -0.31 2.43 15 24 H 0.00 0.01 7.21 -51.93 -0.37 -0.36 15 25 H 0.32 5.18 9.08 -39.29 -0.36 4.82 15 26 H 0.32 5.40 8.07 -39.29 -0.32 5.08 15 27 H 0.14 2.68 7.53 -52.48 -0.40 2.28 15 28 H 0.38 3.59 9.06 45.56 0.41 4.01 15 29 H 0.14 2.37 7.94 -52.48 -0.42 1.95 15 LS Contribution 272.71 15.07 4.11 4.11 Total: -1.00 -26.76 272.71 -6.29 -33.05 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -1.70 Total: 11.11 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.51 Total: -13.28 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.53 Total: -38.46 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.25 Total: -7.04 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.48 Total: -2.37 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.76 -6.29 -33.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.145 kcal (2) G-P(sol) polarization free energy of solvation -26.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds