Wall clock time and date at job start Mon Mar 30 2020 06:33:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 119.99994 * 2 1
4 4 H 1.48493 * 109.47505 * 240.00306 * 3 2 1
5 5 H 1.48504 * 109.47068 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.46881 * 119.99995 * 3 2 1
7 7 C 1.37873 * 120.00136 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1
9 9 C 1.50707 * 120.00104 * 359.97438 * 7 2 1
10 10 H 1.09000 * 109.46721 * 300.00767 * 9 7 2
11 11 C 1.53001 * 109.46983 * 60.00462 * 9 7 2
12 12 N 1.46893 * 109.47262 * 185.00155 * 11 9 7
13 13 C 1.50694 * 109.47217 * 180.02562 * 9 7 2
14 14 C 1.38293 * 119.93677 * 299.72604 * 13 9 7
15 15 C 1.38313 * 120.05369 * 180.27431 * 14 13 9
16 16 F 1.35107 * 120.04023 * 180.02562 * 15 14 13
17 17 C 1.38898 * 119.91751 * 0.02562 * 15 14 13
18 18 O 1.35982 * 120.06740 * 180.02562 * 17 15 14
19 19 C 1.38718 * 119.87098 * 359.97438 * 17 15 14
20 20 Cl 1.73597 * 120.02995 * 179.97438 * 19 17 15
21 21 C 1.38225 * 119.93447 * 120.00149 * 13 9 7
22 22 H 0.97000 * 120.00287 * 0.02562 * 1 2 3
23 23 H 1.09005 * 109.47111 * 305.00046 * 11 9 7
24 24 H 1.09003 * 109.47159 * 64.99822 * 11 9 7
25 25 H 1.00897 * 111.00418 * 180.02562 * 12 11 9
26 26 H 1.00905 * 110.99959 * 303.95257 * 12 11 9
27 27 H 1.08006 * 119.96846 * 0.27801 * 14 13 9
28 28 H 0.96700 * 114.00262 * 269.98077 * 18 17 15
29 29 H 1.08004 * 119.95471 * 359.69881 * 21 13 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1028 1.6965 -1.2124
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6963 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 1 0.6247 -2.5570 0.8896
11 6 0.3710 -2.5800 -1.2495
12 7 -0.4522 -3.7951 -1.1907
13 6 2.2303 -3.6446 -0.0005
14 6 3.1305 -3.7829 -1.0412
15 6 4.0266 -4.8365 -1.0465
16 9 4.9062 -4.9712 -2.0632
17 6 4.0210 -5.7559 -0.0054
18 8 4.9010 -6.7926 -0.0073
19 6 3.1167 -5.6140 1.0368
20 17 3.1057 -6.7611 2.3398
21 6 2.2233 -4.5580 1.0368
22 1 -0.4850 0.8400 -0.0004
23 1 -0.2765 -1.7043 -1.2951
24 1 1.0025 -2.6115 -2.1375
25 1 -1.0426 -3.8718 -2.0053
26 1 0.1233 -4.6170 -1.0830
27 1 3.1337 -3.0676 -1.8505
28 1 4.5712 -7.5877 -0.4480
29 1 1.5194 -4.4471 1.8484
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260436691.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:33:32
Heat of formation + Delta-G solvation = -79.191963 kcal
Electronic energy + Delta-G solvation = -17139.849117 eV
Core-core repulsion = 14003.064176 eV
Total energy + Delta-G solvation = -3136.784941 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 259.052 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-48.65850 -39.47337 -37.21086 -36.34692 -34.64321 -32.31947 -30.35292 -30.12696
-27.19451 -24.04906 -22.94938 -22.28229 -19.91466 -18.48692 -16.94306 -16.76493
-16.15871 -15.80361 -14.99595 -14.94424 -14.63348 -14.28167 -13.81671 -13.65122
-13.23762 -12.71541 -12.19292 -12.13193 -11.95628 -11.21295 -11.13345 -11.08407
-10.71894 -10.60031 -10.47436 -10.32099 -9.73863 -9.41099 -8.59859 -8.44057
-8.10393 -7.75856 -6.16897 -4.26674 1.28434 1.34380 2.21756 3.24008
3.29305 3.32137 3.72714 4.08783 4.31308 4.57651 5.10828 5.23088
5.25863 5.59626 5.66027 5.73345 6.06409 6.23861 6.43148 6.59465
6.66643 6.84574 7.01003 7.44289 7.60382 7.65635 7.74630 8.03536
8.20062 8.25118 8.76912 9.39623 10.87703
Molecular weight = 259.05amu
Principal moments of inertia in cm(-1)
A = 0.022240 B = 0.006504 C = 0.006190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1258.694522 B = 4303.964240 C = 4522.431895
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.881 5.881
2 C 0.067 3.933
3 Si 0.896 3.104
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.275 1.275
7 C -0.520 4.520
8 H 0.060 0.940
9 C 0.082 3.918
10 H 0.053 0.947
11 C 0.066 3.934
12 N -0.852 5.852
13 C 0.002 3.998
14 C -0.132 4.132
15 C 0.082 3.918
16 F -0.135 7.135
17 C 0.048 3.952
18 O -0.480 6.480
19 C -0.033 4.033
20 Cl -0.063 7.063
21 C -0.111 4.111
22 H 0.265 0.735
23 H 0.111 0.889
24 H 0.001 0.999
25 H 0.323 0.677
26 H 0.320 0.680
27 H 0.145 0.855
28 H 0.383 0.617
29 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.393 -10.690 -1.361 11.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.518 5.518
2 C -0.136 4.136
3 Si 0.723 3.277
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.558 4.558
8 H 0.079 0.921
9 C 0.063 3.937
10 H 0.071 0.929
11 C -0.064 4.064
12 N -0.380 5.380
13 C 0.001 3.999
14 C -0.151 4.151
15 C 0.062 3.938
16 F -0.114 7.114
17 C 0.002 3.998
18 O -0.288 6.288
19 C -0.061 4.061
20 Cl -0.034 7.034
21 C -0.130 4.130
22 H 0.075 0.925
23 H 0.129 0.871
24 H 0.019 0.981
25 H 0.134 0.866
26 H 0.130 0.870
27 H 0.162 0.838
28 H 0.238 0.762
29 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 3.318 -9.936 -0.312 10.480
hybrid contribution 0.957 0.140 -1.201 1.541
sum 4.275 -9.796 -1.512 10.794
Atomic orbital electron populations
1.69858 1.05810 1.27073 1.49106 1.24962 0.94920 0.99209 0.94498
0.86589 0.79593 0.82660 0.78859 1.20134 1.21133 1.20058 1.20994
0.92976 0.89339 1.52538 0.92147 1.18004 0.90484 0.88842 0.96336
0.92922 1.22153 0.95712 0.92645 0.95856 1.58969 1.27170 1.05543
1.46274 1.20602 0.94633 0.94600 0.90052 1.21214 0.95285 0.96924
1.01699 1.17913 0.91946 0.98044 0.85922 1.91470 1.66873 1.95677
1.57381 1.17864 0.94741 0.92765 0.94461 1.84918 1.40339 1.23107
1.80462 1.21083 0.98421 0.95070 0.91477 1.98344 1.98054 1.59416
1.47585 1.21138 0.98593 0.92863 1.00363 0.92514 0.87077 0.98119
0.86611 0.86971 0.83757 0.76167 0.84123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.41 11.29 55.43 0.63 -22.78 15
2 C 0.07 1.72 5.29 -17.82 -0.09 1.63 15
3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 15
4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15
5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15
6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15
7 C -0.52 -13.08 8.24 -34.44 -0.28 -13.37 15
8 H 0.06 1.53 7.61 -52.49 -0.40 1.13 15
9 C 0.08 1.85 2.16 -92.92 -0.20 1.65 15
10 H 0.05 1.32 7.87 -51.93 -0.41 0.91 15
11 C 0.07 1.42 5.98 -3.83 -0.02 1.40 15
12 N -0.85 -15.58 9.62 -10.37 -0.10 -15.68 15
13 C 0.00 0.03 3.77 -104.61 -0.39 -0.36 15
14 C -0.13 -2.42 8.63 -39.53 -0.34 -2.76 15
15 C 0.08 1.40 7.31 -39.31 -0.29 1.11 15
16 F -0.14 -2.30 17.11 2.25 0.04 -2.26 15
17 C 0.05 0.77 6.70 -39.16 -0.26 0.51 15
18 O -0.48 -6.79 12.83 -19.68 -0.25 -7.04 15
19 C -0.03 -0.53 6.33 -39.38 -0.25 -0.78 15
20 Cl -0.06 -0.89 28.50 -51.86 -1.48 -2.37 15
21 C -0.11 -1.93 9.45 -39.56 -0.37 -2.30 15
22 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15
23 H 0.11 2.74 5.95 -51.93 -0.31 2.43 15
24 H 0.00 0.01 7.21 -51.93 -0.37 -0.36 15
25 H 0.32 5.18 9.08 -39.29 -0.36 4.82 15
26 H 0.32 5.40 8.07 -39.29 -0.32 5.08 15
27 H 0.14 2.68 7.53 -52.48 -0.40 2.28 15
28 H 0.38 3.59 9.06 45.56 0.41 4.01 15
29 H 0.14 2.37 7.94 -52.48 -0.42 1.95 15
LS Contribution 272.71 15.07 4.11 4.11
Total: -1.00 -26.76 272.71 -6.29 -33.05
By element:
Atomic # 1 Polarization: 12.81 SS G_CDS: -1.70 Total: 11.11 kcal
Atomic # 6 Polarization: -10.77 SS G_CDS: -2.51 Total: -13.28 kcal
Atomic # 7 Polarization: -38.99 SS G_CDS: 0.53 Total: -38.46 kcal
Atomic # 8 Polarization: -6.79 SS G_CDS: -0.25 Total: -7.04 kcal
Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal
Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal
Atomic # 17 Polarization: -0.89 SS G_CDS: -1.48 Total: -2.37 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -26.76 -6.29 -33.05 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260436691.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.145 kcal
(2) G-P(sol) polarization free energy of solvation -26.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.906 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.047 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds